Files in neotoma2
Working with the Neotoma Paleoecology Database
MD5
NEWS.md
README.md
NAMESPACE
DESCRIPTION
LICENSE
R/chronology-methods.R
R/set_site.R
R/set_sample.R
R/plotLeaflet.R
R/parseURL.R
R/dataset-methods.R
R/parse_body.R
R/pingNeotoma.r
R/set_collunit.R
R/set_publications.R
R/build_collunit.R
R/getids.r
R/utils-pipe.R
R/get_downloads.R
R/check_args.R
R/toWide.R
R/set_chronology.R
R/specimen-methods.R
R/get_publications.R
R/toJSON.R
R/use_na.R
R/publication-methods.R
R/neotoma-methods.R
R/build_dataset.R
R/clean.R
R/taxa.R
R/cleanNULL.R
R/build_sample.R
R/build_chron.R
R/02_genericDefinitions.R
R/collunits-methods.R
R/get_specimens.R
R/get_datasets.R
R/pubAuthors.R
R/get_contacts.R
R/set_dataset.R
R/parse_location.R
R/contact-methods.R
R/fix_nulls.r
R/set_server.R
R/testNull.R
R/get_manual.R
R/samples-methods.R
R/chroncontrols.R
R/specimens.R
R/build_specimen.R
R/filter.R
R/site-methods.R
R/set_contacts.R
R/build_site.R
R/samples.R
R/get_table.R
R/check_contacts.R
R/01_classDefinitions.R
R/subset-methods.R
R/get_sites.R
inst/doc/neotoma2-package.html
inst/doc/neotoma2-package.R
inst/doc/neotoma2-package.Rmd
build/vignette.rds
tests/testthat.R
tests/testthat/test_samples.R
tests/testthat/test_toWide.R
tests/testthat/test_generaltests.R
tests/testthat/test_download.R
tests/testthat/test_sites.R
tests/testthat/test_examples.R
tests/testthat/test-parse_location.R
tests/testthat/test_c.R
tests/testthat/test_filter.R
tests/testthat/test_datasets.R
tests/testthat/test-set_server.R
tests/testthat/test_methods.R
tests/testthat/test-get_manual.R
tests/testthat/test_specimens.R
tests/testthat/test_setsample.R
tests/testthat/test_setsite.r
tests/testthat/test-ping.R
tests/testthat/test_chroncontrols.R
tests/testthat/test_clean.R
tests/testthat/test_plotLeaflet.r
tests/testthat/test-get_table.R
tests/testthat/test-toJSON.R
tests/testthat/test-get_contacts.R
vignettes/neotoma2-package.Rmd
vignettes/images/understanding_S4_structure_get_datasets.png
vignettes/images/understandingAgeRanges.svg
vignettes/images/neotomaUML_as.dia
vignettes/images/siteboundarydiagram.svg
vignettes/images/understanding_S4_structure.svg
vignettes/images/understanding_S4_structure_get_datasets.svg
vignettes/images/neotomaUML_as.png
vignettes/images/siteshot.png
vignettes/images/neotomaUML_as.svg
vignettes/images/understanding_S4_structure_get_sites.svg
vignettes/images/understanding_S4_structure.png
vignettes/images/site_collunit_dataset.svg
vignettes/images/manual_siteStructure.png
man/doi-publication-method.Rd
man/taxa-collunits-method.Rd
man/as.data.frame-authors-method.Rd
man/c-contact-method.Rd
man/write.csv-datasets-method.Rd
man/as.data.frame-chronologies-method.Rd
man/cite_data-site-method.Rd
man/toJSON.Rd
man/set_dataset.Rd
man/get_publications.default.Rd
man/get_sites.numeric.Rd
man/doi-site-method.Rd
man/sub-sub-specimens-numeric-ANY-method.Rd
man/cash-chronology-method.Rd
man/sub-specimens-numeric-ANY-method.Rd
man/chroncontrols-sites-method.Rd
man/sub-subset-collunits-ANY-ANY-ANY-method.Rd
man/parse_site.Rd
man/write.csv-sites-method.Rd
man/specimens-sites-method.Rd
man/as.data.frame-collunits-method.Rd
man/set_site.Rd
man/specimen-class.Rd
man/chronology-class.Rd
man/selectMatch-publication-numeric-method.Rd
man/cash-samples-method.Rd
man/show-datasets-method.Rd
man/names-publication-method.Rd
man/as.data.frame-specimens-method.Rd
man/sub-collunits-numeric-ANY-method.Rd
man/get_table.Rd
man/selectMatch-publication-logical-method.Rd
man/names-publications-method.Rd
man/pingNeotoma.Rd
man/length-chronologies-method.Rd
man/samples-collunit-method.Rd
man/show-dataset-method.Rd
man/testNull.Rd
man/doi.Rd
man/taxa-sites-method.Rd
man/get_publications.publication.Rd
man/getids.site.Rd
man/set_sample.Rd
man/cash-collunit-method.Rd
man/showMatch.Rd
man/coordinates-sites-method.Rd
man/write.csv-chronologies-method.Rd
man/getids.Rd
man/subset-specimen-character-ANY-ANY-method.Rd
man/chroncontrols-site-method.Rd
man/showMatch-publication-method.Rd
man/get_specimens.sites.Rd
man/missingOrNULL-class.Rd
man/samples.Rd
man/set_server.Rd
man/sub-sub-datasets-numeric-ANY-method.Rd
man/names-site-method.Rd
man/datasets-collunits-method.Rd
man/get_manual.Rd
man/build_specimen.Rd
man/authors-class.Rd
man/sub-sub-sites-numeric-ANY-method.Rd
man/toJSON-sites-method.Rd
man/chronologies-class.Rd
man/getids.collunit.Rd
man/as.data.frame-sites-method.Rd
man/get_publications.numeric.Rd
man/build_chron.Rd
man/cash-sites-method.Rd
man/as.data.frame-site-method.Rd
man/get_downloads.character.Rd
man/sub-sub-collunits-numeric-ANY-method.Rd
man/subset-dataset-numeric-ANY-ANY-method.Rd
man/names-contact-method.Rd
man/set_contact.Rd
man/sample-class.Rd
man/sites-class.Rd
man/cite_data.Rd
man/length-sites-method.Rd
man/cleanNULL.Rd
man/show-publications-method.Rd
man/collunits-site-method.Rd
man/cash-set-specimen-method.Rd
man/get_sites.Rd
man/get_downloads.sites.Rd
man/chronologies-sites-method.Rd
man/length-specimens-method.Rd
man/get_datasets.numeric.Rd
man/sub-sub-samples-numeric-ANY-method.Rd
man/get_specimens.default.Rd
man/names-collunit-method.Rd
man/cash-chronologies-method.Rd
man/samples-collunits-method.Rd
man/get_downloads.numeric.Rd
man/c-specimens-method.Rd
man/parse_location.Rd
man/collunits.Rd
man/taxa.Rd
man/cash-contact-method.Rd
man/specimens-site-method.Rd
man/show-sites-method.Rd
man/get_contacts.numeric.Rd
man/subset-site-character-ANY-ANY-method.Rd
man/datasets-collunit-method.Rd
man/cash-site-method.Rd
man/show-collunits-method.Rd
man/show-site-method.Rd
man/publication-class.Rd
man/getids.sites.Rd
man/use_na.Rd
man/get_specimens.Rd
man/show-specimens-method.Rd
man/get_contacts.default.Rd
man/show-collunit-method.Rd
man/as.list-sites-method.Rd
man/as.data.frame-specimen-method.Rd
man/datasets.Rd
man/cash-publication-method.Rd
man/datasets-class.Rd
man/sub-sub-contacts-numeric-ANY-method.Rd
man/set_default.Rd
man/summary-sites-method.Rd
man/cash-contacts-method.Rd
man/cash-set-site-method.Rd
man/subset-collunit-character-ANY-ANY-method.Rd
man/author-class.Rd
man/clean.collunits.Rd
man/cash-sample-method.Rd
man/build_sites.Rd
man/get_publications.publications.Rd
man/set_default-chronologies-method.Rd
man/names-specimen-method.Rd
man/specimens-collunits-method.Rd
man/plotLeaflet-site-method.Rd
man/show-publication-method.Rd
man/newURL.Rd
man/c-publications-method.Rd
man/set_publications.Rd
man/show-specimen-method.Rd
man/chronologies-collunit-method.Rd
man/c-sites-method.Rd
man/datasets-sites-method.Rd
man/cash-datasets-method.Rd
man/cash-collunits-method.Rd
man/plotLeaflet.Rd
man/pipe.Rd
man/cash-set-chronology-method.Rd
man/show-contacts-method.Rd
man/clean.Rd
man/as.data.frame-publications-method.Rd
man/clean.sites.Rd
man/get_sites.default.Rd
man/sub-subset-datasets-ANY-ANY-ANY-method.Rd
man/c-chronologies-method.Rd
man/sub-subset-publications-ANY-ANY-ANY-method.Rd
man/c-datasets-method.Rd
man/get_sites.sites.Rd
man/length-datasets-method.Rd
man/set_chronology.Rd
man/contacts-class.Rd
man/repositories-class.Rd
man/doi-sites-method.Rd
man/check_contacts.contacts.Rd
man/get_datasets.default.Rd
man/c-collunits-method.Rd
man/build_collunits.Rd
man/repository-class.Rd
man/get_datasets.Rd
man/selectMatch.Rd
man/specimens-class.Rd
man/chronologies-site-method.Rd
man/cash-set-dataset-method.Rd
man/as.data.frame-dataset-method.Rd
man/build_dataset.Rd
man/write.csv-collunits-method.Rd
man/cash-specimen-method.Rd
man/write.csv-specimens-method.Rd
man/site-class.Rd
man/fix_null.Rd
man/specimens.Rd
man/sub-subset-sites-ANY-ANY-ANY-method.Rd
man/subset-site-numeric-ANY-ANY-method.Rd
man/sub-sub-chronologies-numeric-ANY-method.Rd
man/cash-set-collunit-method.Rd
man/collunits-sites-method.Rd
man/clean.datasets.Rd
man/length-collunits-method.Rd
man/sub-site-character-ANY-method.Rd
man/as.data.frame-chronology-method.Rd
man/coordinates.Rd
man/filter.sites.Rd
man/cash-specimens-method.Rd
man/sub-subset-specimens-ANY-ANY-ANY-method.Rd
man/get_publications.Rd
man/datasets-site-method.Rd
man/c-missingOrNULL-method.Rd
man/subset-collunit-numeric-ANY-ANY-method.Rd
man/contact-class.Rd
man/add_chronology.Rd
man/get_downloads.Rd
man/show-contact-method.Rd
man/toWide.Rd
man/collunits-class.Rd
man/sub-datasets-numeric-ANY-method.Rd
man/samples-site-method.Rd
man/get_specimens.numeric.Rd
man/cite_data-sites-method.Rd
man/parseURL.Rd
man/set_collunit.Rd
man/add_chronology-collunit-chronology-data.frame-method.Rd
man/as.data.frame-contacts-method.Rd
man/check_contacts.Rd
man/as.data.frame-publication-method.Rd
man/filter.Rd
man/plot-sites-ANY-method.Rd
man/chronologies-collunits-method.Rd
man/names-dataset-method.Rd
man/length-publications-method.Rd
man/cash-dataset-method.Rd
man/c-contacts-method.Rd
man/taxa-site-method.Rd
man/plotLeaflet-sites-method.Rd
man/get_datasets.sites.Rd
man/samples-sites-method.Rd
man/collunit-class.Rd
man/check_args.Rd
man/getids.collunits.Rd
man/build_sample.Rd
man/get_contacts.Rd
man/subset-dataset-character-ANY-ANY-method.Rd
man/sub-site-numeric-ANY-method.Rd
man/as.data.frame-contact-method.Rd
man/chroncontrols.Rd
man/sub-sub-publications-numeric-ANY-method.Rd
man/taxa-collunit-method.Rd
man/sub-sites-numeric-ANY-method.Rd
man/publications-class.Rd
man/as.data.frame-datasets-method.Rd
man/subset-specimen-numeric-ANY-ANY-method.Rd
man/parsebody.Rd
man/specimens-collunit-method.Rd
man/length-samples-method.Rd
man/samples-class.Rd
man/as.data.frame-collunit-method.Rd
man/chronologies.Rd
man/dataset-class.Rd
man/figures/lifecycle-stable.svg
man/figures/lifecycle-superseded.svg
man/figures/lifecycle-soft-deprecated.svg
man/figures/lifecycle-questioning.svg
man/figures/lifecycle-archived.svg
man/figures/lifecycle-defunct.svg
man/figures/lifecycle-experimental.svg
man/figures/lifecycle-deprecated.svg
man/figures/lifecycle-maturing.svg
