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#' @title set Site Information for Fossil Sites
#' @import lubridate
#' @importFrom methods new
#' @importFrom methods slot<-
#' @param x object to be set as collunit
#' @param collectionunitid collection unit identifier
#' @param notes notes
#' @param handle handle
#' @param colldate collection date
#' @param location location of the collection unit
#' @param waterdepth depth at where the sample is taken
#' @param gpslocation location with GPS
#' @param collunittype type of collection unit
#' @param collectiondevice device used to collect the sample
#' @param collectionunitname name of the collection unit
#' @param depositionalenvironment depositional environment
#' @param datasets datasets that the collection unit has
#' @param chronologies chronologies taken from the collection unit
#' @param defaultchronology best chronology model identifier to
#' be used with this collection unit
#' @description Function to create new collection unit objects for personal analysis.
#' The new object will not be uploaded to the database.
#' @export
#' @returns `collunit` object
#' @examples {
#' # Create a collunit
#' my_collunit <- set_collunit(notes = "my lake")
#' }
set_collunit <- function(x = NA,
collectionunitid = NA_integer_,
notes = NA_character_,
handle = NA_character_,
colldate = as.Date(character(1)),
location = NA_character_,
waterdepth = NA_integer_,
gpslocation = st_as_sf(st_sfc()),
collunittype = NA_character_,
collectiondevice = NA_character_,
collectionunitname = NA_character_,
depositionalenvironment = NA_character_,
datasets = new("datasets"),
chronologies = new("chronologies"),
defaultchronology = NA_integer_) {
function_call <- match.call()
if (suppressWarnings(is.na(x))) {
x <- new("collunit")
if (is.na(collectionunitid)) {
x@collectionunitid <- uuid::UUIDgenerate()
} else {
x@collectionunitid <- collectionunitid
}
x@notes <- notes
x@handle <- handle
x@colldate <- colldate
x@location <- location
x@waterdepth <- waterdepth
x@gpslocation <- gpslocation
x@collunittype <- collunittype
x@collectiondevice <- collectiondevice
x@collectionunitname <- collectionunitname
x@depositionalenvironment <- depositionalenvironment
x@datasets <- datasets
x@chronologies <- chronologies
x@defaultchronology <- defaultchronology
} else {
if (is(x, "collunit")) {
if(length(function_call)>2){
for (i in 3:length(function_call)) {
slot(x, names(function_call)[[i]]) <- eval(function_call[[i]])
}
return(x)
} else {
return(x)
}
} else {
stop("`x` must be a collunit object if it is supplied.")
}
}
return(x)
}
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