Infers species associations from community matrices. Uses local and (optional) regional-scale co-occurrence data by comparing observed partial correlation coefficients between species to those estimated from regional species distributions. Extends Gaussian graphical models to a null modeling framework. Provides interface to a variety of inverse covariance matrix estimation methods.
Benjamin Blonder, Naia Morueta-Holme
Maintainer: Benjamin Blonder <[email protected]>
Morueta-Holme, N., Blonder, B., et al. A network approach for inferring species associations from co-occurrence data. (in review)
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