netie-package: Antigen T Cell Interaction Estimation

In netie: Antigen T Cell Interaction Estimation

Description

The Bayesian hierarchical model named antigen-T cell interaction estimation is to estimate the history of the immune pressure on the evolution of the tumor clones.The model is based on the estimation result from Andrew Roth (2014) <doi:10.1038/nmeth.2883>.

Details

The DESCRIPTION file: This package was not yet installed at build time.
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~~ An overview of how to use the package, including the most important functions ~~ netie(input_data,sigma_square = 100000,alpha = 10,beta = 2,sigma_p_sqr = 0.1,sigma_a_sqr = NULL,max_iter =1000,multi_sample = T) Please refer to https://github.com/tianshilu/Netie for more details.

Author(s)

Tianshi Lu

Maintainer: Tianshi Lu <[e-mail]>

References

https://github.com/tianshilu/Netie

Examples

data(input_data)
netie(input_data,sigma_square=100000,alpha=10,beta=2,
sigma_p_sqr=0.1,max_iter=1000,multi_sample=TRUE)

netie documentation built on Sept. 29, 2021, 9:08 a.m.