Man pages for neurobase
'Neuroconductor' Base Package with Helper Functions for 'nifti' Objects
| applyEmptyImageDimensions-methods | Apply Subsetting from Empty Image Dimensions |
| boxplot.nifti | Boxplot of Values in an Image |
| breaker | Find Breaks for nifti Image Plotting |
| checkimg-methods | Force object to filename |
| check_mask | Check Mask is Binary |
| check_mask_fail | Check Mask is Binary, Fail otherwise |
| check_nifti_header-methods | Check if nifti image or read in a nifti header |
| check_nifti-methods | Check if nifti image or read in a nifti image |
| checkniigz-methods | Force object to filename with .nii.gz extension |
| checknii-methods | Force object to filename with .nii extension |
| check_outfile | Check output filename |
| cog | Image Center of Gravity |
| colorbar | Add a colorbar to an ortho2 object |
| copyNIfTIHeader | Copy NIfTI Header to an array |
| cut.nifti | Perform Cut on an image |
| datatype | Change Data type for img |
| density.nifti | Density of Values in an Image |
| dicer | Calculate Dice from a Table |
| double_ortho | Double Orthographic Display |
| dropEmptyImageDimensions | Drop Empty Image Dimensions |
| emptyImageDimensionsMask | Make Mask from Empty Image Dimensions |
| ensure_array | Ensure an array output |
| fast_dice_tab | Fast Dice Tabulation |
| fast_readnii | Reading NIfTI images through RNifti |
| file_imgext | Get Image file extension |
| finite_img-methods | Finite Image |
| flip_img | Flip NifTI Image |
| getEmptyImageDimensions | Get Empty Image Dimensions |
| hist.nifti | Histogram of Values in an Image |
| images2matrix | Transform set of images to matrix |
| img_colour_df | Convert Image to Data.frame with Colors |
| img_indices | Retrieve Image Indices |
| img_list_to_ts | Image List to Time Series |
| img_ts_to_df | Image Time Series to Data.frame |
| img_ts_to_list | Image Time Series to list |
| img_ts_to_matrix | Image Time Series to Matrix |
| maskEmptyImageDimensions-methods | Apply Masking from Empty Image Dimensions |
| mask_img | Mask Image |
| mask_vals-methods | Extract or Replace Values Inside a Mask |
| mean.nifti | Mean of Values in an Image |
| minmax_img-methods | Normalize Image using Range |
| multi_overlay | Create Multi-Image Plot with Overlays |
| newnii | Resets image parameters for a copied nifti object |
| niftiarr | Make new nifti from array |
| nii.stub | Grab nii file stubname |
| orient_rpi | Reorient an Image to RPI orientation |
| ortho2 | Orthographic Display, added options |
| ortho_diff | Plot differences for Prediction and Gold Standard |
| parse_img_ext | Parse Image Extensions |
| quantile_img | Create Quantile Image |
| quantile.nifti | Sample Quantiles |
| randomize_mask | Randomize Image based on Mask |
| random_nifti | Create Random 'nifti' object |
| readNIfTI2 | readNIfTI with default non-reorientation |
| read_rpi | Read NIfTI file reoriented to RPI |
| remake_img | Remake Image from Vector |
| remap_filename | Build Filename (usually for images) |
| replace_dropped_dimensions | Remake Dropped Dimensions |
| replaceEmptyImageDimensions-methods | Replace Subsetting from Empty Image Dimensions |
| replace_outside_surface | Replace Values Outside Surface of image |
| rescale_img | Image Rescaler |
| reverse_orient_rpi | Reverse Reorientation an Image to RPI orientation |
| robust_window | Window image based on quantiles of Image |
| same_dims | Check if Objects have Same Dimensions |
| separate_img-methods | Separate Labeled Image into Multiple Binary Images |
| slice_colour_df | Slice a Image Color Data.frame |
| subset_dti-methods | Subset DTI data based on b-values #' |
| tempimg | Create temporary nii.gz file |
| window_img | nifti image windower |
| write_nifti | General NIfTI Writer |
| writeNIfTI2 | writeNIfTI with default non-reorientation |
| xyz | Image Center of Gravity Wrapper |
| zero_pad | Zero pads an image |
| zlimmer | Find Image z-limits |
| zscore_img | Get Z-score over a margin of an img |
