writeNIfTI2 | R Documentation |
This function calls the writeNIfTI
function from the
oro.nifti
package, but makes sure to remove .nii
extension and
warnings can be suppressed.
writeNIfTI2(nim, filename, dtype = FALSE, compression = 9, ...) writenii( nim, filename, dtype = TRUE, drop_dim = TRUE, warn = FALSE, compression = 9, rm_extensions = TRUE, ... )
nim |
object of class |
filename |
path to save the NIfTI file. Suffix will be removed |
dtype |
Should |
compression |
compression level for gzipped files. |
... |
Additional arguments passed to |
drop_dim |
Should |
warn |
Should warnings from |
rm_extensions |
should niftiExtensions be converted to simple nifti objects before writing? |
Nothing
While writeNIfTI2
does not run datatyper
as default,
writenii
does. Additional functionality will be added to writenii
likely
but will not to writeNIfTI2
set.seed(5) dims = rep(10, 3) arr = array(rnorm(prod(dims)), dim = dims) nim = oro.nifti::nifti(arr) rnifti = RNifti::asNifti(nim) tfile = tempfile(fileext = ".nii.gz") timg = writenii(nim, tfile, rm_extensions = TRUE, warn = TRUE) timg = writeNIfTI2(nim, tfile, dtype = TRUE)
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