API for neuroim2
Data Structures for Brain Imaging Data

Global functions
!,DenseNeuroVol-method	Man page
!,SparseNeuroVol-method	Man page
.affine_error	Source code
.apply_data_scaling	Source code
.apply_data_scaling_matrix	Source code
.as_affine4	Source code
.build_neuro_header	Source code
.cgb_compute_robust_weights	Source code
.cgb_normalize_confounds	Source code
.cgb_normalize_time_weights	Source code
.cgb_prepare_mask	Source code
.cgb_robust_profile	Source code
.cgb_validate_graph	Source code
.checkDimensions	Source code
.clear_mmap_cache	Source code
.combine_volume_labels	Source code
.concat4D	Source code
.data_scale_params	Source code
.default_axcode_labels	Source code
.downsample_bin_axis	Source code
.downsample_linear_index_3d	Source code
.downsample_sparse_coords	Source code
.downsample_sparse_neurovec	Source code
.flip_array_axis	Source code
.future_lapply_with_cores	Source code
.getAxis	Source code
.getDataCode	Source code
.getDataSize	Source code
.getDataStorage	Source code
.getEndian	Source code
.getMMapMode	Source code
.getRStorage	Source code
.get_mmap_handle	Source code
.gridToIndex	Source code
.gridToIndex3D	Source code
.indexToGrid	Source code
.infer_volume_labels_from_vols	Source code
.isExtension	Source code
.isSigned	Source code
.makeCubicGrid	Source code
.makeSquareGrid	Source code
.make_nifti_volume_labels_extension	Source code
.meta_info_list	Source code
.mmap_cache_key	Source code
.mmap_cache_size	Source code
.nearestAnatomy	Source code
.nearest_anatomy_from_matrix	Source code
.niftiExt	Source code
.normalize_axcode_labels	Source code
.normalize_volume_labels	Source code
.onUnload	Source code
.parse_mapped_voxels	Source code
.pruneCoords	Source code
.read_meta_info	Source code
.read_mmap	Source code
.resample	Source code
.resample_clustered_neurovol	Source code
.resolve_volume_label_index	Source code
.subset_volume_labels	Source code
.validate_affine	Source code
.validate_orientation_matrix	Source code
AFNIMetaInfo	Man page Source code
AFNIMetaInfo-class	Man page
ANT_POST	Man page
AbstractSparseNeuroVec-class	Man page
Arith,ClusteredNeuroVol,ClusteredNeuroVol-method	Man page
Arith,ClusteredNeuroVol,NeuroVol-method	Man page
Arith,ClusteredNeuroVol,numeric-method	Man page
Arith,DenseNeuroVec,DenseNeuroVec-method	Man page
Arith,DenseNeuroVol,DenseNeuroVol-method	Man page
Arith,DenseNeuroVol,numeric-method	Man page
Arith,NeuroVec,NeuroVec-method	Man page
Arith,NeuroVec,NeuroVol-method	Man page
Arith,NeuroVol,ClusteredNeuroVol-method	Man page
Arith,NeuroVol,NeuroVec-method	Man page
Arith,NeuroVol,SparseNeuroVol-method	Man page
Arith,ROIVol,ROIVol-method	Man page
Arith,SparseNeuroVec,SparseNeuroVec-method	Man page
Arith,SparseNeuroVol,NeuroVol-method	Man page
Arith,SparseNeuroVol,SparseNeuroVol-method	Man page
Arith,SparseNeuroVol,numeric-method	Man page
Arith,numeric,ClusteredNeuroVol-method	Man page
Arith,numeric,DenseNeuroVol-method	Man page
Arith,numeric,SparseNeuroVol-method	Man page
Arith-methods	Man page
ArrayLike3D-class	Man page
ArrayLike4D-class	Man page
ArrayLike5D-class	Man page
AxisSet-class	Man page
AxisSet1D	Source code
AxisSet1D-class	Man page
AxisSet2D	Source code
AxisSet2D-class	Man page
AxisSet3D	Source code
AxisSet3D-class	Man page
AxisSet4D-class	Man page
AxisSet5D-class	Man page
BigNeuroVec	Man page Source code
BigNeuroVec-class	Man page
BinaryReader	Man page Source code
BinaryReader-class	Man page
BinaryWriter	Man page Source code
BinaryWriter-class	Man page
ClusteredNeuroVec	Man page Source code
ClusteredNeuroVec-class	Man page
ClusteredNeuroVol	Man page Source code
ClusteredNeuroVol-class	Man page
ColumnReader	Man page Source code
ColumnReader-class	Man page
Compare,DenseNeuroVol,DenseNeuroVol-method	Man page
Compare,DenseNeuroVol,numeric-method	Man page
Compare,NeuroVec,NeuroVec-method	Man page
Compare,SparseNeuroVol,numeric-method	Man page
Compare,numeric,DenseNeuroVol-method	Man page
Compare,numeric,SparseNeuroVol-method	Man page
Compare-methods	Man page
DenseNeuroVec	Man page Source code
DenseNeuroVec-class	Man page
DenseNeuroVol	Man page Source code
DenseNeuroVol-class	Man page
FileBackedNeuroVec	Man page Source code
FileBackedNeuroVec-class	Man page
FileFormat-class	Man page
FileFormat-operations	Man page
FileMetaInfo-class	Man page
FileSource-class	Man page
INF_SUP	Man page
IndexLookupVol	Man page Source code
IndexLookupVol-class	Man page
Kernel	Man page Source code
Kernel-class	Man page
LEFT_RIGHT	Man page
Logic,DenseNeuroVol,DenseNeuroVol-method	Man page
Logic,NeuroVol,SparseNeuroVol-method	Man page
Logic,NeuroVol,logical-method	Man page
Logic,SparseNeuroVol,NeuroVol-method	Man page
Logic,SparseNeuroVol,SparseNeuroVol-method	Man page
Logic,logical,NeuroVol-method	Man page
Logic-methods	Man page
LogicalNeuroVol	Man page Source code
LogicalNeuroVol-class	Man page
MappedNeuroVec	Man page Source code
MappedNeuroVec-class	Man page
MappedNeuroVecSource	Man page Source code
MappedNeuroVecSource-class	Man page
MetaInfo	Man page Source code
MetaInfo-class	Man page
NIFTIMetaInfo	Man page Source code
NIFTIMetaInfo-class	Man page
NamedAxis-class	Man page
NeuroBucket-class	Man page
NeuroHyperVec	Man page Source code
NeuroHyperVec-class	Man page
NeuroObj-class	Man page
NeuroSlice	Man page Source code
NeuroSlice-class	Man page
NeuroSpace	Man page Source code
NeuroSpace-class	Man page
NeuroVec	Man page Source code
NeuroVec-class	Man page
NeuroVecSeq	Man page Source code
NeuroVecSeq-class	Man page
NeuroVecSource	Man page Source code
NeuroVecSource-class	Man page
NeuroVol	Man page Source code
NeuroVol-class	Man page
NeuroVolSource	Man page Source code
NiftiExtension	Man page Source code
NiftiExtension-class	Man page
NiftiExtensionCodes	Man page
NiftiExtensionList-class	Man page
None	Man page
NullAxis	Man page
OrientationList2D	Man page
OrientationList3D	Man page
POST_ANT	Man page
RIGHT_LEFT	Man page
ROI-class	Man page
ROICoords	Man page Source code
ROICoords-class	Man page
ROIVec	Man page Source code
ROIVec-class	Man page
ROIVecWindow-class	Man page
ROIVol	Man page Source code
ROIVol-class	Man page
ROIVolWindow-class	Man page
SUP_INF	Man page
SparseNeuroVec	Man page Source code
SparseNeuroVec-class	Man page
SparseNeuroVecSource	Source code
SparseNeuroVecSource-class	Man page
SparseNeuroVol	Man page Source code
SparseNeuroVol,array	Man page
SparseNeuroVol,numeric	Man page
SparseNeuroVol-class	Man page
Summary,DenseNeuroVol-method	Man page
Summary,SparseNeuroVec-method	Man page
Summary,SparseNeuroVol-method	Man page
Summary-methods	Man page
TIME	Man page
TimeAxis	Man page
[	Man page
[,AbstractSparseNeuroVec,numeric,numeric,ANY-method	Man page
[,ArrayLike3D,matrix,missing,ANY-method	Man page
[,ArrayLike3D,missing,missing,ANY-method	Man page
[,ArrayLike3D,missing,numeric,ANY-method	Man page
[,ArrayLike3D,numeric,missing,ANY-method	Man page
[,ArrayLike4D,integer,missing,ANY-method	Man page
[,ArrayLike4D,matrix,missing,ANY-method	Man page
[,ArrayLike4D,missing,missing,ANY-method	Man page
[,ArrayLike4D,missing,numeric,ANY-method	Man page
[,ArrayLike4D,numeric,missing,ANY-method	Man page
[,ArrayLike4D,numeric,numeric,ANY-method	Man page
[,ClusteredNeuroVec,missing,missing,ANY-method	Man page
[,ClusteredNeuroVec,numeric,numeric,ANY-method	Man page
[,DenseNeuroVol,ROIVol,missing,ANY-method	Man page
[,DenseNeuroVol,integer,missing,ANY-method	Man page
[,DenseNeuroVol,numeric,missing,ANY-method	Man page
[,NeuroHyperVec,ANY,ANY,ANY-method	Man page
[,NeuroVol,ROICoords,missing,ANY-method	Man page
[,NeuroVol,ROIVol,missing,ANY-method	Man page
[,ROICoords,numeric,missing,ANY-method	Man page
[,ROIVol,ROICoords,missing,ANY-method	Man page
[,ROIVol,ROICoords,numeric,ANY-method	Man page
[,ROIVol,logical,missing,ANY-method	Man page
[,ROIVol,logical,numeric,ANY-method	Man page
[,ROIVol,matrix,missing,ANY-method	Man page
[,ROIVol,matrix,numeric,ANY-method	Man page
[,ROIVol,missing,missing,ANY-method	Man page
[,ROIVol,missing,numeric,ANY-method	Man page
[,ROIVol,numeric,missing,ANY-method	Man page
[,ROIVol,numeric,numeric,ANY-method	Man page
[,SparseNeuroVol,numeric,numeric,ANY-method	Man page
[.NeuroHyperVec	Man page
[[,AbstractSparseNeuroVec,numeric-method	Man page
[[,NeuroVec,character-method	Man page
[[,NeuroVec,numeric-method	Man page
[[,NeuroVecSeq,numeric-method	Man page
add_dim	Man page
add_dim,NeuroSpace,numeric-method	Man page
affine_to_axcodes	Man page Source code
affine_to_orientation	Man page Source code
affine_utils	Man page
anatomical_axes	Man page
annotate_orientation	Man page Source code
append_diag	Man page Source code
apply_affine	Man page Source code
apply_cgb_graph_cpp	Source code
apply_orientation	Man page Source code
as,DenseNeuroVol,array	Man page
as-ClusteredNeuroVol-DenseNeuroVol	Man page
as.array	Man page
as.array,ClusteredNeuroVol-method	Man page
as.array,SparseNeuroVec-method	Man page
as.array,SparseNeuroVol-method	Man page
as.dense	Man page
as.dense,ClusteredNeuroVol-method	Man page
as.dense,DenseNeuroVol-method	Man page
as.dense,NeuroVecSeq-method	Man page
as.dense,ROIVol-method	Man page
as.dense,SparseNeuroVec-method	Man page
as.dense,SparseNeuroVol-method	Man page
as.list,FileBackedNeuroVec-method	Man page
as.list,NeuroVec-method	Man page
as.list,SparseNeuroVec-method	Man page
as.logical	Man page
as.logical,NeuroVol-method	Man page
as.logical,ROIVol-method	Man page
as.mask	Man page
as.mask,NeuroVol,missing-method	Man page
as.mask,NeuroVol,numeric-method	Man page
as.matrix	Man page
as.matrix,AbstractSparseNeuroVec-method	Man page
as.matrix,ClusteredNeuroVec-method	Man page
as.matrix,DenseNeuroVec-method	Man page
as.matrix,MappedNeuroVec-method	Man page
as.matrix,NeuroVec-method	Man page
as.matrix,NeuroVecSeq-method	Man page
as.matrix,ROIVec-method	Man page
as.numeric,ROIVol-method	Man page
as.numeric,SparseNeuroVol-method	Man page
as.raster	Man page
as.sparse	Man page
as.sparse,DenseNeuroVec,LogicalNeuroVol-method	Man page
as.sparse,DenseNeuroVec,numeric-method	Man page
as.sparse,DenseNeuroVol,LogicalNeuroVol-method	Man page
as.sparse,DenseNeuroVol,numeric-method	Man page
as.sparse,ROIVol,ANY-method	Man page
as.vector,SparseNeuroVol-method	Man page
as_canonical	Man page Source code
as_mmap	Man page
as_mmap,FileBackedNeuroVec-method	Man page
as_mmap,MappedNeuroVec-method	Man page
as_mmap,NeuroVec-method	Man page
as_mmap,SparseNeuroVec-method	Man page
as_mmap-methods	Man page
as_nifti_header	Man page Source code
axcodes	Man page
axcodes,NeuroObj-method	Man page
axcodes,NeuroSpace-method	Man page
axcodes,matrix-method	Man page
axcodes_to_orientation	Man page Source code
axes	Man page
axes,NeuroSpace-method	Man page
bilateral_filter	Man page Source code
bilateral_filter_4d	Man page Source code
bilateral_filter_4d_cpp_par	Source code
bilateral_filter_cpp	Source code
bilateral_filter_vec	Source code
bilateral_weights	Source code
blobby_shape	Man page Source code
bootstrap_searchlight	Man page Source code
bounds	Man page
bounds,NeuroSpace-method	Man page
box_blur	Source code
box_nbhd	Source code
build_cgb_graph_cpp	Source code
build_cgb_graph_nuis_cpp	Source code
calculate_downsample_dims	Source code
calculate_downsample_dims_3d	Source code
centroid	Man page
centroid,NeuroSpace-method	Man page
centroid,ROICoords-method	Man page
centroids	Man page
centroids,ClusteredNeuroVec-method	Man page
centroids,ClusteredNeuroVol-method	Man page
cgb_filter	Man page Source code
cgb_make_graph	Man page Source code
cgb_smooth	Man page Source code
cgb_smooth_loro	Man page Source code
checkDim	Source code
close,BinaryReader-method	Man page
close,BinaryWriter-method	Man page
cluster_searchlight_series	Man page Source code
clustered_searchlight	Man page Source code
coerce,ClusteredNeuroVol,DenseNeuroVol-method	Man page
compute_limits	Source code
concat	Man page
concat,AbstractSparseNeuroVec,missing-method	Man page
concat,DenseNeuroVol,DenseNeuroVol-method	Man page
concat,DenseNeuroVol,missing-method	Man page
concat,NeuroVec,NeuroVec-method	Man page
concat,NeuroVec,NeuroVol-method	Man page
concat,NeuroVol,NeuroVec-method	Man page
concat,ROIVec,ROIVec-method	Man page
concat,SparseNeuroVec,SparseNeuroVec-method	Man page
conn_comp	Man page
conn_comp,NeuroVol-method	Man page
conn_comp_3D	Man page Source code
convert_hd	Source code
coord_neuro_fixed	Source code
coord_to_grid	Man page
coord_to_grid,NeuroSpace,matrix-method	Man page
coord_to_grid,NeuroSpace,numeric-method	Man page
coord_to_grid,NeuroVol,matrix-method	Man page
coord_to_grid,NeuroVol,numeric-method	Man page
coord_to_index	Man page
coord_to_index,NeuroSpace,matrix-method	Man page
coord_to_index,NeuroSpace,numeric-method	Man page
coord_to_index,NeuroVol,matrix-method	Man page
coords	Man page
coords,AbstractSparseNeuroVec-method	Man page
coords,IndexLookupVol-method	Man page
coords,ROICoords-method	Man page
coords,ROIVol-method	Man page
createNIfTIHeader	Man page Source code
cube_shape	Man page Source code
cuboid_roi	Man page Source code
data_file	Man page
data_file,FileFormat,character-method	Man page
data_file_matches	Man page
data_file_matches,FileFormat,character-method	Man page
data_reader	Man page
data_reader,AFNIMetaInfo-method	Man page
data_reader,NIFTIMetaInfo-method	Man page
dense_array_5d	Source code
deoblique	Man page Source code
dim,ClusteredNeuroVec-method	Man page
dim,FileMetaInfo-method	Man page
dim,NeuroHyperVec-method	Man page
dim,NeuroObj-method	Man page
dim,NeuroSpace-method	Man page
dim,ROICoords-method	Man page
dim,ROIVol-method	Man page
dim_of	Man page
dim_of,NeuroSpace,NamedAxis-method	Man page
dot_reduce	Man page Source code
downsample	Man page
downsample,DenseNeuroVec-method	Man page
downsample,DenseNeuroVol-method	Man page
downsample,NeuroVec-method	Man page
downsample,NeuroVol-method	Man page
downsample,SparseNeuroVec-method	Man page
downsample_3d_cpp	Source code
downsample_4d_cpp	Source code
drop	Man page
drop,NeuroVec-method	Man page
drop_dim	Man page
drop_dim,AxisSet2D,missing-method	Man page
drop_dim,AxisSet2D,numeric-method	Man page
drop_dim,AxisSet3D,missing-method	Man page
drop_dim,AxisSet3D,numeric-method	Man page
drop_dim,NeuroSpace,missing-method	Man page
drop_dim,NeuroSpace,numeric-method	Man page
ecode_name	Man page Source code
ellipsoid_shape	Man page Source code
embed_kernel	Man page
embed_kernel,Kernel,NeuroSpace,numeric-method	Man page
ensure_reader_seekable	Source code
ensure_writer_seekable	Source code
exgridToIndex4DCpp	Source code
extension	Man page
extension,NiftiExtensionList,numeric-method	Man page
extensions	Man page
extractor3d	Man page
extractor4d	Man page
fast.expand.grid	Source code
fast_multilayer_laplacian_enhancement_masked	Source code
file_matches	Man page
file_matches,FileFormat,character-method	Man page
findAnatomy	Source code
findAnatomy3D	Man page Source code
find_descriptor	Source code
format_mem	Source code
from_matvec	Man page Source code
gaussian_blur	Man page Source code
gaussian_blur_cpp	Source code
gaussian_weights	Source code
get_afni_attribute	Man page Source code
gridToIndex3DCpp	Source code
gridToIndexCpp	Source code
grid_to_coord	Man page
grid_to_coord,NeuroSpace,matrix-method	Man page
grid_to_coord,NeuroSpace,numeric-method	Man page
grid_to_coord,NeuroVol,matrix-method	Man page
grid_to_grid	Man page
grid_to_grid,NeuroSpace,matrix-method	Man page
grid_to_grid,matrix,matrix-method	Man page
grid_to_index	Man page
grid_to_index,NeuroSlice,matrix-method	Man page
grid_to_index,NeuroSlice,numeric-method	Man page
grid_to_index,NeuroSpace,matrix-method	Man page
grid_to_index,NeuroSpace,numeric-method	Man page
grid_to_index,NeuroVol,matrix-method	Man page
grid_to_index,NeuroVol,numeric-method	Man page
guided_filter	Man page Source code
has_extensions	Man page
has_extensions,NiftiExtensionList-method	Man page
has_extensions,list-method	Man page
header	Man page
header,FileMetaInfo-method	Man page
header,character-method	Man page
header_file	Man page
header_file,FileFormat,character-method	Man page
header_file_matches	Man page
header_file_matches,FileFormat,character-method	Man page
image	Man page
indexToGridCpp	Source code
index_to_coord	Man page
index_to_coord,NeuroSpace,integer-method	Man page
index_to_coord,NeuroSpace,numeric-method	Man page
index_to_coord,NeuroVec,integer-method	Man page
index_to_coord,NeuroVol,integer-method	Man page
index_to_grid	Man page
index_to_grid,NeuroSlice,numeric-method	Man page
index_to_grid,NeuroSpace,numeric-method	Man page
index_to_grid,NeuroVec,index-method	Man page
index_to_grid,NeuroVec,integer-method	Man page
index_to_grid,NeuroVol,index-method	Man page
index_to_grid,NeuroVol,integer-method	Man page
indices	Man page
indices,AbstractSparseNeuroVec-method	Man page
indices,IndexLookupVol-method	Man page
indices,ROIVec-method	Man page
indices,ROIVol-method	Man page
inverse_trans	Man page
inverse_trans,NeuroSpace-method	Man page
kernel_filt_3d_cpp	Source code
labels,ClusteredNeuroVec-method	Man page
laplace_enhance	Man page Source code
length,ClusteredNeuroVec-method	Man page
length,NeuroVec-method	Man page
length,NeuroVecSeq-method	Man page
length,ROICoords-method	Man page
length,ROIVol-method	Man page
linear_access	Man page
linear_access,AbstractSparseNeuroVec,numeric-method	Man page
linear_access,DenseNeuroVec,integer-method	Man page
linear_access,DenseNeuroVec,numeric-method	Man page
linear_access,DenseNeuroVol,integer-method	Man page
linear_access,DenseNeuroVol,numeric-method	Man page
linear_access,FileBackedNeuroVec,numeric-method	Man page
linear_access,MappedNeuroVec,numeric-method	Man page
linear_access,NeuroHyperVec,ANY-method	Man page
linear_access,NeuroVecSeq,numeric-method	Man page
linear_access,SparseNeuroVol,numeric-method	Man page
list_afni_attributes	Man page Source code
load_data	Man page
load_data,MappedNeuroVecSource-method	Man page
load_data,NeuroVecSource-method	Man page
load_data,NeuroVolSource-method	Man page
load_data,SparseNeuroVecSource-method	Man page
local_sphere	Source code
local_spheres	Source code
lookup	Man page
lookup,AbstractSparseNeuroVec,numeric-method	Man page
lookup,IndexLookupVol,numeric-method	Man page
make_spherical_grid	Source code
make_time_weights	Man page Source code
mapToColors	Man page
map_values	Man page
map_values,NeuroVol,list-method	Man page
map_values,NeuroVol,matrix-method	Man page
mapf	Man page
mapf,NeuroVol,Kernel-method	Man page
mask	Man page
mask,AbstractSparseNeuroVec-method	Man page
mask,ClusteredNeuroVol-method	Man page
mask,DenseNeuroVec-method	Man page
mask,DenseNeuroVol-method	Man page
mask,FileBackedNeuroVec-method	Man page
mask,LogicalNeuroVol-method	Man page
mask,MappedNeuroVec-method	Man page
mask,NeuroHyperVec-method	Man page
mask,NeuroSlice-method	Man page
mask,SparseNeuroVecSource-method	Man page
matchAnatomy2D	Source code
matchAnatomy3D	Source code
matchAxis	Source code
matricized_access	Man page
matricized_access,BigNeuroVec,integer-method	Man page
matricized_access,BigNeuroVec,matrix-method	Man page
matricized_access,BigNeuroVec,numeric-method	Man page
matricized_access,SparseNeuroVec,integer-method	Man page
matricized_access,SparseNeuroVec,matrix-method	Man page
matricized_access,SparseNeuroVec,numeric-method	Man page
matrixToQuatern	Man page Source code
matrix_to_colors	Source code
matrix_to_raster_grob	Source code
matrix_to_rgba	Source code
mean,DenseNeuroVec-method	Man page
mean,NeuroVec-method	Man page
mean,SparseNeuroVec-method	Man page
mean-methods	Man page
meta_info	Man page
meta_info,FileMetaInfo-method	Man page
meta_info,character-method	Man page
ndim	Man page
ndim,AxisSet-method	Man page
ndim,ClusteredNeuroVec-method	Man page
ndim,NeuroHyperVec-method	Man page
ndim,NeuroObj-method	Man page
ndim,NeuroSpace-method	Man page
neuro-downsample	Man page
neuro-ops	Man page
neuro-resample	Man page
neuroim2	Man page
neuroim2-package	Man page
niftiDim	Source code
nifti_volume_labels	Source code
normalize_mask	Man page Source code
not-methods	Man page
num_clusters	Man page
num_clusters,ClusteredNeuroVec-method	Man page
num_clusters,ClusteredNeuroVol-method	Man page
numericOrMatrix-class	Man page
obliquity	Man page Source code
orientation_inverse_affine	Man page Source code
orientation_to_axcodes	Man page Source code
orientation_transform	Man page Source code
orientation_utils	Man page
origin	Man page
origin,NeuroHyperVec-method	Man page
origin,NeuroSpace-method	Man page
origin,NeuroVec-method	Man page
origin,NeuroVol-method	Man page
output_aligned_space	Man page Source code
parseElement	Source code
parseFloatAttribute	Source code
parseIntAttribute	Source code Source code
parseStringAttribute	Source code
parse_afni_extension	Man page Source code
parse_comment_extension	Source code
parse_extension	Man page Source code
parse_niml_element	Source code
parse_niml_file	Source code
parse_niml_header	Source code
parse_niml_next	Source code
partition	Man page
partition,DenseNeuroVol,numeric-method	Man page
partition,LogicalNeuroVol,integer-method	Man page
partition,LogicalNeuroVol,numeric-method	Man page
patch_set	Man page
patch_set,NeuroVol,numeric,LogicalNeuroVol-method	Man page
patch_set,NeuroVol,numeric,missing-method	Man page
perm_mat	Man page
perm_mat,AxisSet2D-method	Man page
perm_mat,AxisSet3D-method	Man page
perm_mat,NeuroSpace-method	Man page
plot,NeuroSlice,ANY-method	Man page
plot,NeuroSlice-method	Man page
plot,NeuroVol,NeuroVol-method	Man page
plot,NeuroVol,missing-method	Man page
plot,NeuroVol-method	Man page
plot_montage	Man page Source code
plot_ortho	Man page Source code
plot_overlay	Man page Source code
prep_sparsenvec	Source code
prepare_confounds	Man page Source code
print.NeuroHeader	Source code
print.summary.NeuroVec	Source code
print.summary.NeuroVol	Source code
quaternToMatrix	Man page Source code
radius_search_3d_direct	Source code
radius_search_3d_nonisotropic	Source code
radius_search_3d_precomputed	Source code
random_searchlight	Man page Source code
read_afni_header	Source code
read_columns	Man page
read_columns,ColumnReader,integer-method	Man page
read_elements	Man page
read_elements,BinaryReader,numeric-method	Man page
read_header	Man page Source code
read_hyper_vec	Man page Source code
read_image	Man page Source code
read_mapped_data	Source code
read_mapped_series	Source code
read_mapped_vols	Source code
read_meta_info	Man page
read_meta_info,AFNIFormat-method	Man page
read_meta_info,NIFTIFormat-method	Man page
read_nifti_extensions	Source code
read_nifti_header	Source code
read_niml_data	Source code
read_vec	Man page
read_vol	Man page Source code
read_vol_list	Man page Source code
reorient	Man page
reorient,NeuroSpace,character-method	Man page
resample	Man page
resample,ClusteredNeuroVol,NeuroSpace-method	Man page
resample,ClusteredNeuroVol,NeuroVol-method	Man page
resample,NeuroVol,NeuroSpace-method	Man page
resample,NeuroVol,NeuroVol-method	Man page
resample_to	Man page Source code
resampled_searchlight	Man page Source code
rescale01	Source code
rescale_affine	Man page Source code
resolve_cmap	Man page Source code
roi_surface_matrix	Source code
roi_vector_matrix	Source code
safe_axcodes	Source code
scale	Man page
scale_fill_neuro	Man page Source code
scale_series	Man page
scale_series,DenseNeuroVec,logical,logical-method	Man page
scale_series,NeuroVec,logical,logical-method	Man page
scale_series,NeuroVec,logical,missing-method	Man page
scale_series,NeuroVec,missing,logical-method	Man page
scale_series,NeuroVec,missing,missing-method	Man page
scale_series,SparseNeuroVec,logical,logical-method	Man page
searchlight	Man page Source code
searchlight-methods	Man page
searchlight_coords	Man page Source code
searchlight_shape_functions	Man page
series	Man page
series,AbstractSparseNeuroVec,ROICoords-method	Man page
series,AbstractSparseNeuroVec,integer-method	Man page
series,AbstractSparseNeuroVec,matrix-method	Man page
series,AbstractSparseNeuroVec,numeric-method	Man page
series,ClusteredNeuroVec,numeric-method	Man page
series,DenseNeuroVec,integer-method	Man page
series,DenseNeuroVec,matrix-method	Man page
series,NeuroHyperVec,ANY-method	Man page
series,NeuroVec,LogicalNeuroVol-method	Man page
series,NeuroVec,NeuroVol-method	Man page
series,NeuroVec,ROICoords-method	Man page
series,NeuroVec,integer-method	Man page
series,NeuroVec,matrix-method	Man page
series,NeuroVec,numeric-method	Man page
series,NeuroVecSeq,integer-method	Man page
series,NeuroVecSeq,matrix-method	Man page
series,NeuroVecSeq,numeric-method	Man page
series_reader	Source code
series_roi	Man page
series_roi,NeuroVec,LogicalNeuroVol-method	Man page
series_roi,NeuroVec,ROICoords-method	Man page
series_roi,NeuroVec,matrix-method	Man page
series_roi,NeuroVec,numeric-method	Man page
series_roi,NeuroVecSeq,matrix-method	Man page
show,AxisSet1D-method	Man page
show,AxisSet2D-method	Man page
show,AxisSet3D-method	Man page
show,AxisSet4D-method	Man page
show,ClusteredNeuroVec-method	Man page
show,ClusteredNeuroVol-method	Man page
show,DenseNeuroVec-method	Man page
show,DenseNeuroVol-method	Man page
show,FileMetaInfo-method	Man page
show,IndexLookupVol-method	Man page
show,Kernel-method	Man page
show,MappedNeuroVec-method	Man page
show,NamedAxis-method	Man page
show,NeuroHyperVec-method	Man page
show,NeuroSlice-method	Man page
show,NeuroSpace-method	Man page
show,NeuroVec-method	Man page
show,NeuroVecSeq-method	Man page
show,NeuroVecSource-method	Man page
show,NeuroVol-method	Man page
show,NiftiExtension-method	Man page
show,NiftiExtensionList-method	Man page
show,ROICoords-method	Man page
show,ROIVec-method	Man page
show,ROIVol-method	Man page
show,SparseNeuroVec-method	Man page
show,SparseNeuroVol-method	Man page
show-helpers	Man page
show_field	Source code
show_header	Source code
show_rule	Source code
simulate_fmri	Man page Source code
slice	Man page
slice,NeuroVol,numeric,NeuroSpace,AxisSet3D-method	Man page
slice,NeuroVol,numeric,numeric,missing-method	Man page
slice2volume	Man page Source code
slice_df	Source code
slice_to_matrix	Source code
slice_to_volume_affine	Man page Source code
slices	Man page
slices,NeuroVol-method	Man page
space	Man page
space,ClusteredNeuroVec-method	Man page
space,IndexLookupVol-method	Man page
space,NeuroHyperVec-method	Man page
space,NeuroObj-method	Man page
space,NeuroSpace-method	Man page
space,ROICoords-method	Man page
space_utils	Man page
spacing	Man page
spacing,NeuroHyperVec-method	Man page
spacing,NeuroObj-method	Man page
spacing,NeuroSpace-method	Man page
spacing,ROICoords-method	Man page
spatial-filter	Man page
spherical_roi	Man page Source code
spherical_roi_set	Man page Source code
split_blocks	Man page
split_blocks,NeuroVec,factor-method	Man page
split_blocks,NeuroVec,integer-method	Man page
split_clusters	Man page
split_clusters,ClusteredNeuroVol,missing-method	Man page
split_clusters,NeuroVec,ClusteredNeuroVol-method	Man page
split_clusters,NeuroVec,integer-method	Man page
split_clusters,NeuroVec,numeric-method	Man page
split_clusters,NeuroVol,ClusteredNeuroVol-method	Man page
split_clusters,NeuroVol,integer-method	Man page
split_clusters,NeuroVol,numeric-method	Man page
split_fill	Man page
split_fill,NeuroVol,factor,function-method	Man page
split_reduce	Man page
split_reduce,NeuroVec,factor,function-method	Man page
split_reduce,NeuroVec,factor,missing-method	Man page
split_reduce,matrix,factor,function-method	Man page
split_reduce,matrix,factor,missing-method	Man page
split_reduce,matrix,integer,function-method	Man page
split_scale	Man page
split_scale,DenseNeuroVec,factor,logical,logical-method	Man page
split_scale,DenseNeuroVec,factor,logical,missing-method	Man page
split_scale,DenseNeuroVec,factor,missing,missing-method	Man page
split_scale,matrix,factor,logical,logical-method	Man page
split_scale,matrix,factor,missing,missing-method	Man page
square_roi	Man page Source code
strip_extension	Man page
strip_extension,FileFormat,character-method	Man page
sub_clusters	Man page
sub_clusters,ClusteredNeuroVec,character-method	Man page
sub_clusters,ClusteredNeuroVec,integer-method	Man page
sub_clusters,ClusteredNeuroVec,numeric-method	Man page
sub_clusters,ClusteredNeuroVol,character-method	Man page
sub_clusters,ClusteredNeuroVol,integer-method	Man page
sub_clusters,ClusteredNeuroVol,numeric-method	Man page
sub_vector	Man page
sub_vector,AbstractSparseNeuroVec,numeric-method	Man page
sub_vector,FileBackedNeuroVec,numeric-method	Man page
sub_vector,NeuroVec,character-method	Man page
sub_vector,NeuroVec,numeric-method	Man page
sub_vector,NeuroVecSeq,numeric-method	Man page
summary,DenseNeuroVec-method	Man page
summary,NeuroVol-method	Man page
summary,SparseNeuroVec-method	Man page
summary-neuro-methods	Man page
temporal_access	Man page
temporal_access,BigNeuroVec,integer-method	Man page
temporal_access,BigNeuroVec,numeric-method	Man page
temporal_access,SparseNeuroVec,integer-method	Man page
temporal_access,SparseNeuroVec,numeric-method	Man page
theme_neuro	Man page Source code
to_matvec	Man page Source code
total_extension_size	Source code
trans	Man page
trans,MetaInfo-method	Man page
trans,NIFTIMetaInfo-method	Man page
trans,NeuroHyperVec-method	Man page
trans,NeuroObj-method	Man page
trans,NeuroSpace-method	Man page
validate_indices	Source code
values	Man page
values,ClusteredNeuroVec-method	Man page
values,DenseNeuroVol-method	Man page
values,ROIVec-method	Man page
values,ROIVol-method	Man page
values,SparseNeuroVol-method	Man page
vec_from_vols	Man page Source code
vectors	Man page
vectors,DenseNeuroVec,missing-method	Man page
vectors,NeuroVec,logical-method	Man page
vectors,NeuroVec,missing-method	Man page
vectors,NeuroVec,numeric-method	Man page
vectors,NeuroVecSeq,logical-method	Man page
vectors,NeuroVecSeq,missing-method	Man page
vectors,NeuroVecSeq,numeric-method	Man page
vectors,ROIVec,integer-method	Man page
vectors,ROIVec,logical-method	Man page
vectors,ROIVec,missing-method	Man page
vectors,ROIVec,numeric-method	Man page
vectors,SparseNeuroVec,missing-method	Man page
vectors,matrix,integer-method	Man page
vectors,matrix,missing-method	Man page
vectors,matrix,numeric-method	Man page
vols	Man page
vols,NeuroVec,missing-method	Man page
vols,NeuroVec,numeric-method	Man page
volume_labels	Man page
volume_labels,NeuroVec-method	Man page
vox2out_vox	Man page Source code
voxel_sizes	Man page Source code
voxels	Man page
voxels,Kernel-method	Man page
which_dim	Man page
which_dim,NeuroSpace,NamedAxis-method	Man page
write_elements	Man page
write_elements,BinaryWriter,numeric-method	Man page
write_nifti_extensions	Source code
write_nifti_header	Source code
write_nifti_hyper_vector	Source code
write_nifti_vector	Source code
write_nifti_volume	Source code
write_vec	Man page
write_vec,NeuroHyperVec,character,character,missing-method	Man page
write_vec,NeuroHyperVec,character,missing,character,ANY-method	Man page
write_vec,NeuroHyperVec,character,missing,character-method	Man page
write_vec,NeuroHyperVec,character,missing,missing-method	Man page
write_vec,NeuroVec,character,character,missing-method	Man page
write_vec,NeuroVec,character,missing,character,ANY-method	Man page
write_vec,NeuroVec,character,missing,character-method	Man page
write_vec,NeuroVec,character,missing,missing-method	Man page
write_vec,ROIVec,character,missing,missing-method	Man page
write_vol	Man page
write_vol,ClusteredNeuroVol,character,missing,missing-method	Man page
write_vol,NeuroVol,character,character,missing-method	Man page
write_vol,NeuroVol,character,missing,character-method	Man page
write_vol,NeuroVol,character,missing,missing-method	Man page
write_vol,ROIVol,character,character,missing-method	Man page