Files in neuroim2
Data Structures for Brain Imaging Data

MD5
NEWS.md
NAMESPACE
DESCRIPTION
LICENSE
R/RcppExports.R R/binary_io.R R/SparseNeuroVec-validity.R R/header_api.R R/all_class.R R/all_generic.R R/neuroim.R R/read_image.R R/meta_info.R R/clustervol.R R/plot-overlay.R R/neurovol.R R/cgb_nuisance.R R/resample.R R/conncomp.R R/neurohypervec.R R/plot-ortho.R R/palettes.R R/spat_filter.R R/meta_info_api.R R/cgb.R R/file_format.R R/common.R R/simulate.R R/plot-helpers.R R/show_helpers.R R/filebacked_neurovec.R R/resample_to.R R/downsample.R R/neuroslice.R R/neurovecseq.R R/nifti_io.R R/roi.R R/mapped_neurovec.R R/searchlight.R R/niml_io.R R/ops.R R/neurospace.R R/nifti_extensions.R R/affine_utils.R R/afni_io.R R/deoblique.R R/neuro_obj.R R/orientation.R R/sparse_neurovec.R R/theme.R R/summary_methods.R R/plot-montage.R R/zzz.R R/space_utils.R R/neurovec.R R/globals.R R/array_like.R R/clustered_neurovec.R R/index_vol.R R/axis.R R/big_neurovec.R
src/Makevars.win
src/Makevars
src/fast_laplacian_enhance.cpp
src/indexFuns.h
src/RcppExports.cpp
src/conncomp.cpp
src/radius_search_3d.cpp
src/downsample_3d.cpp
src/indexFuns.cpp
src/kernel_filter.cpp
src/Makevars.orig
src/downsample_4d.cpp
src/bilateral_filter_4d.cpp
src/bilateral_filter_3d.cpp
src/cgb.cpp
inst/WORDLIST
inst/doc/Smoothing.R inst/doc/Cookbook.R
inst/doc/clustered-neurovec.html
inst/doc/ImageVolumes.html
inst/doc/slice-visualization.R
inst/doc/AnalysisWorkflows.html
inst/doc/regionOfInterest.Rmd inst/doc/Smoothing.Rmd
inst/doc/pipelines.html
inst/doc/regionOfInterest.R
inst/doc/slice-visualization.html
inst/doc/NeuroVector.Rmd
inst/doc/ChoosingBackends.html
inst/doc/ChoosingBackends.R inst/doc/pipelines.Rmd inst/doc/ImageVolumes.Rmd inst/doc/VolumesAndVectors.Rmd inst/doc/pipelines.R inst/doc/slice-visualization.Rmd
inst/doc/NeuroVector.html
inst/doc/coordinate-systems.Rmd inst/doc/AnalysisWorkflows.Rmd inst/doc/Cookbook.Rmd inst/doc/Resampling.R inst/doc/Overview.R
inst/doc/Cookbook.html
inst/doc/Overview.html
inst/doc/Resampling.html
inst/doc/AnalysisWorkflows.R
inst/doc/Smoothing.html
inst/doc/clustered-neurovec.Rmd inst/doc/coordinate-systems.R inst/doc/Resampling.Rmd inst/doc/Overview.Rmd inst/doc/ChoosingBackends.Rmd inst/doc/VolumesAndVectors.R inst/doc/clustered-neurovec.R
inst/doc/regionOfInterest.html
inst/doc/NeuroVector.R
inst/doc/VolumesAndVectors.html
inst/doc/ImageVolumes.R
inst/doc/coordinate-systems.html
inst/examples/downsample_3d_example.R inst/examples/downsample_example.R
inst/extdata/mni_downsampled.nii.gz
inst/extdata/global_mask2_v5.nii.gz
inst/extdata/global_mask_v4.nii
inst/extdata/global_mask2.nii.gz
build/vignette.rds
tests/testthat.R tests/spelling.R tests/testthat/test-searchlight-parallel.R tests/testthat/test-orientation.R tests/testthat/test-ops.R tests/testthat/test-perf-regression.R tests/testthat/test-sparse-neurovec-regressions.R tests/testthat/test-plot-helpers-coverage.R tests/testthat/test-performance-guardrails.R tests/testthat/test-neuroslice.R tests/testthat/test-spatfilter.R tests/testthat/test-affine-utils.R tests/testthat/test-nifti-ext-coverage.R tests/testthat/test-mean-methods.R tests/testthat/test-neurovol.R tests/testthat/test-hypervec.R tests/testthat/test-vecseq-coverage.R tests/testthat/test-volume-labels.R tests/testthat/test-roi-coverage.R tests/testthat/test-summary-methods.R tests/testthat/test-axis-coverage.R tests/testthat/test-vignette-pipelines.R tests/testthat/test-filebacked.R tests/testthat/test-searchlight-correctness.R tests/testthat/test-read-image.R tests/testthat/test-mapped.R tests/testthat/test-vignette-roi.R tests/testthat/test-clustered-neurovec.R tests/testthat/test-neurovec-regressions.R tests/testthat/test-backend-parity.R tests/testthat/test-deoblique.R tests/testthat/test-neuroslice-coverage.R tests/testthat/test-imageproc.R tests/testthat/test-neurovec-coverage.R tests/testthat/test-plot-overlay-alpha.R tests/testthat/test-orientation-coverage.R tests/testthat/test-sparse-neurovec-lazy-accessors.R tests/testthat/test-header-api-coverage.R tests/testthat/test-vecseq.R tests/testthat/test-clusteredneurovol.R tests/testthat/test-plot-oblique-affine.R tests/testthat/test-common.R tests/testthat/test-nifti-extensions.R tests/testthat/test-sparse-neurovec-as-matrix.R tests/testthat/test-mmap-cache.R tests/testthat/test-array-like.R tests/testthat/test-orientation-utils.R tests/testthat/test-simulate.R tests/testthat/test-resample-to.R tests/testthat/test-plot-montage-coverage.R tests/testthat/test-roivol.R tests/testthat/test-hypervec-io.R tests/testthat/test-resample.R tests/testthat/test-neurovol-coverage.R tests/testthat/helper-neuroim2.R tests/testthat/test-downsample.R tests/testthat/test-neurospace.R tests/testthat/test-file-format-coverage.R tests/testthat/test-scale-series.R tests/testthat/test-mask.R tests/testthat/test-latentvec.R tests/testthat/test-oblique-regression.R tests/testthat/test-nifti-utils.R tests/testthat/test-splitscale.R tests/testthat/test-meta-info-coverage.R tests/testthat/test-header-api.R tests/testthat/test-plot-ortho-coverage.R tests/testthat/test-io-scaling-and-truncation.R tests/testthat/test-sparse-neurovec-subset.R tests/testthat/test-sparse-neurovec-validity.R tests/testthat/test-neurovol-regressions.R tests/testthat/test-vignette-neuro-vectors.R tests/testthat/test-cgb.R tests/testthat/test-plot-snapshots.R tests/testthat/test-h5neurovec.R tests/testthat/test-neurohypervec.R tests/testthat/test-nifti-roundtrip.R tests/testthat/test-spatfilter-coverage.R tests/testthat/test-searchlight.R tests/testthat/test-conn_comp.R tests/testthat/test-bilateral-4d.R tests/testthat/test-neurovec.R tests/testthat/test-searchlight-coverage.R tests/testthat/test-space-utils.R
vignettes/albers.css
vignettes/regionOfInterest.Rmd vignettes/Smoothing.Rmd vignettes/NeuroVector.Rmd vignettes/pipelines.Rmd vignettes/ImageVolumes.Rmd vignettes/VolumesAndVectors.Rmd vignettes/slice-visualization.Rmd vignettes/coordinate-systems.Rmd vignettes/AnalysisWorkflows.Rmd vignettes/Cookbook.Rmd vignettes/clustered-neurovec.Rmd
vignettes/albers.js
vignettes/Resampling.Rmd vignettes/Overview.Rmd vignettes/ChoosingBackends.Rmd man/downsample-methods.Rd man/as.matrix-methods.Rd man/cgb_filter.Rd man/index_to_coord-methods.Rd man/NeuroVol-class.Rd man/quaternToMatrix.Rd man/NeuroVecSeq-methods.Rd man/deoblique.Rd man/AbstractSparseNeuroVec-class.Rd man/split_scale-methods.Rd man/lookup.Rd man/Kernel.Rd man/which_dim-methods.Rd man/read_vec.Rd man/map_values-methods.Rd man/NeuroSpace.Rd man/length-methods.Rd man/vectors-methods.Rd man/extensions.Rd man/as_nifti_header.Rd man/spherical_roi.Rd man/AxisSet1D-class.Rd man/meta_info.Rd man/cluster_searchlight_series.Rd man/perm_mat-methods.Rd man/AxisSet-class.Rd man/mean-methods.Rd man/slice-methods.Rd man/BigNeuroVec-methods.Rd man/FileBackedNeuroVec-class.Rd man/as-ClusteredNeuroVol-DenseNeuroVol.Rd man/FileBackedNeuroVec.Rd man/plot-methods.Rd man/split_clusters-methods.Rd man/NeuroBucket-class.Rd man/mapToColors.Rd man/data_file-methods.Rd man/NiftiExtension.Rd man/space_utils.Rd man/data_reader.Rd man/file_matches-methods.Rd man/Kernel-class.Rd man/read_vol_list.Rd man/searchlight-methods.Rd man/sub_vector-methods.Rd man/plot_overlay.Rd man/BinaryReader-class.Rd man/NeuroVecSource-class.Rd man/NeuroVecSource.Rd man/origin-methods.Rd man/as.vector-methods.Rd man/show-helpers.Rd man/spacing-methods.Rd man/NeuroVecSeq-class.Rd man/dim-methods.Rd man/AxisSet3D-class.Rd man/AxisSet2D-class.Rd man/patch_set.Rd man/NeuroSlice.Rd man/concat-methods.Rd man/BinaryReader.Rd man/coord_to_index-methods.Rd man/searchlight.Rd man/ClusteredNeuroVol-class.Rd man/centroids-methods.Rd man/write_vec-methods.Rd man/series_roi.Rd man/read_meta_info-methods.Rd man/indices-methods.Rd man/read_elements-methods.Rd man/as.numeric-methods.Rd man/BinaryWriter-class.Rd man/LogicalNeuroVol-class.Rd man/NeuroHyperVec-class.Rd man/SparseNeuroVec-class.Rd man/as.mask-methods.Rd man/ROIVec-class.Rd man/Logic-methods.Rd man/read_columns-methods.Rd man/Summary-methods.Rd man/resolve_cmap.Rd man/NIFTIMetaInfo.Rd man/gaussian_blur.Rd man/AxisSet4D-class.Rd man/IndexLookupVol-class.Rd man/BinaryWriter.Rd man/SparseNeuroVol-class.Rd man/mask-methods.Rd man/neuro-resample.Rd man/parse_afni_extension.Rd man/read_vol.Rd man/linear_access-methods.Rd man/coord_to_grid-methods.Rd man/strip_extension-methods.Rd man/volume_labels-methods.Rd man/as.mask.Rd man/TimeAxis.Rd man/searchlight_shape_functions.Rd man/load_data.Rd man/bilateral_filter.Rd man/ArrayLike4D-class.Rd man/neuroim2-package.Rd man/dim_of-methods.Rd man/grid_to_coord-methods.Rd man/axcodes-methods.Rd man/MetaInfo.Rd man/ROIVolWindow-class.Rd man/NullAxis.Rd man/as.logical-methods.Rd man/findAnatomy3D.Rd man/neuro-ops.Rd man/as.array-methods.Rd man/ROICoords.Rd man/partition-methods.Rd man/NeuroSlice-class.Rd man/SparseNeuroVec-methods.Rd man/extractor4d.Rd man/MetaInfo-class.Rd man/list_afni_attributes.Rd man/FileFormat-operations.Rd man/NiftiExtension-class.Rd man/load_data-methods.Rd man/MappedNeuroVec-class.Rd man/NeuroObj-class.Rd man/anatomical_axes.Rd man/summary-neuro-methods.Rd man/as.raster.Rd man/parse_extension.Rd man/as.matrix.Rd man/conn_comp-methods.Rd man/resampled_searchlight.Rd man/inverse_trans-methods.Rd man/scale_fill_neuro.Rd man/add_dim-methods.Rd man/normalize_mask.Rd man/make_time_weights.Rd man/clustered_searchlight.Rd man/ROI-class.Rd man/Arith-methods.Rd man/grid_to_index-methods.Rd man/createNIfTIHeader.Rd man/reorient-methods.Rd man/plot_ortho.Rd man/FileSource-class.Rd man/data_reader-methods.Rd man/split_fill-methods.Rd man/BigNeuroVec-class.Rd man/indices.Rd man/grid_to_grid-methods.Rd man/numericOrMatrix-class.Rd man/conn_comp_3D.Rd man/write_elements-methods.Rd man/Compare-methods.Rd man/as.dense.Rd man/read_hyper_vec.Rd man/drop.Rd man/resample-methods.Rd man/plot_montage.Rd man/num_clusters-methods.Rd man/ClusteredNeuroVec-class.Rd man/vols-methods.Rd man/labels-methods.Rd man/DenseNeuroVec-class.Rd man/affine_utils.Rd man/bounds-methods.Rd man/split_reduce-methods.Rd man/laplace_enhance.Rd man/MappedNeuroVecSource-class.Rd man/space-methods.Rd man/temporal_access-methods.Rd man/square_roi.Rd man/resample_to.Rd man/DenseNeuroVol-class.Rd man/scale.Rd man/guided_filter.Rd man/as.sparse-methods.Rd man/map-methods.Rd man/embed_kernel-methods.Rd man/trans-methods.Rd man/ArrayLike5D-class.Rd man/header-methods.Rd man/voxels-methods.Rd man/header_file_matches-methods.Rd man/patch_set-methods.Rd man/as-DenseNeuroVol-array.Rd man/FileMetaInfo-class.Rd man/drop_dim-methods.Rd man/TIME.Rd man/spherical_roi_set.Rd man/theme_neuro.Rd man/AxisSet5D-class.Rd man/ColumnReader.Rd man/get_afni_attribute.Rd man/NeuroVec-class.Rd man/as.sparse.Rd man/random_searchlight.Rd man/ArrayLike3D-class.Rd man/ROIVecWindow-class.Rd man/cgb_smooth.Rd man/ndim-methods.Rd man/centroid-methods.Rd man/series-methods.Rd man/neuro-downsample.Rd man/matrixToQuatern.Rd man/searchlight_coords.Rd man/drop-methods.Rd man/values-methods.Rd man/bilateral_filter_4d.Rd man/lookup-methods.Rd man/slices-methods.Rd man/NiftiExtensionCodes.Rd man/NeuroVecSeq.Rd man/ROICoords-class.Rd man/coords-methods.Rd man/as.array.Rd man/spatial-filter.Rd man/None.Rd man/not-methods.Rd man/as_canonical.Rd man/scale_series-methods.Rd man/ClusteredNeuroVec.Rd man/coords.Rd man/extension.Rd man/vec_from_vols.Rd man/SparseNeuroVecSource-class.Rd man/index_to_grid-methods.Rd man/ROIVol.Rd man/matricized_access-methods.Rd man/SparseNeuroVol-numeric.Rd man/cgb_make_graph.Rd man/ROIVec.Rd man/as.list-methods.Rd man/read_image.Rd man/linear_access.Rd man/NeuroVol.Rd man/extractor3d.Rd man/has_extensions.Rd man/ColumnReader-class.Rd man/as_mmap.Rd man/ROIVol-class.Rd man/NiftiExtensionList-class.Rd man/axes-methods.Rd man/cgb_smooth_loro.Rd man/NeuroHyperVec.Rd man/as.dense-methods.Rd man/FileFormat-class.Rd man/orientation_utils.Rd man/NamedAxis-class.Rd man/annotate_orientation.Rd man/AFNIMetaInfo.Rd man/cuboid_roi.Rd man/split_blocks-methods.Rd man/show-methods.Rd man/close-methods.Rd man/NeuroSpace-class.Rd man/read_header.Rd man/header_file-methods.Rd man/ecode_name.Rd man/OrientationList3D.Rd man/simulate_fmri.Rd man/SparseNeuroVol-array.Rd man/extract-methods.Rd man/write_vol-methods.Rd man/prepare_confounds.Rd man/image.Rd man/sub_clusters.Rd man/OrientationList2D.Rd man/data_file_matches-methods.Rd man/NeuroVolSource-class.Rd
neuroim2 documentation built on April 16, 2026, 5:07 p.m.