nexus
Sourcing Archaeological Materials by Chemical Composition

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101
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API for nexus
Sourcing Archaeological Materials by Chemical Composition

Global functions
%perturbe% Man page
%perturbe%,CompositionMatrix,CompositionMatrix-method Man page
%power% Man page
%power%,CompositionMatrix,numeric-method Man page
%power%,numeric,CompositionMatrix-method Man page
.ALR Man page
.CLR Man page
.CompositionMatrix Man page
.GroupedALR Man page
.GroupedCLR Man page
.GroupedComposition Man page
.GroupedILR Man page
.GroupedLR Man page
.GroupedPLR Man page
.ILR Man page
.LR Man page
.LogRatio Man page
.NumericMatrix Man page
.OutlierIndex Man page
.PLR Man page
.ReferenceGroups Man page
.element_threshold Source code
.group_extract Source code
.onLoad Source code
.subscript1 Source code
.subscript2 Source code
.transform_ilr Source code
ALR-class Man page
CLR-class Man page
CompositionMatrix-class Man page
GroupedALR-class Man page
GroupedCLR-class Man page
GroupedComposition-class Man page
GroupedILR-class Man page
GroupedLR-class Man page
GroupedLogRatio-class Man page
GroupedPLR-class Man page
ILR-class Man page
LR-class Man page
LogRatio-class Man page
NumericMatrix-class Man page
OutlierIndex-class Man page
PLR-class Man page
ReferenceGroups-class Man page
[,CompositionMatrix,index,index,logical-method Man page
[,CompositionMatrix,index,index,missing-method Man page
[,CompositionMatrix,index,missing,logical-method Man page
[,CompositionMatrix,index,missing,missing-method Man page
[,CompositionMatrix,missing,index,logical-method Man page
[,CompositionMatrix,missing,index,missing-method Man page
[,CompositionMatrix,missing,missing,logical-method Man page
[,CompositionMatrix,missing,missing,missing-method Man page
[<-,CompositionMatrix-method Man page
[[<-,CompositionMatrix-method Man page
`%perturbe%`,CompositionMatrix,CompositionMatrix-method Man page
`%perturbe%`-method Man page
`%power%`,CompositionMatrix,numeric-method Man page
`%power%`,numeric,CompositionMatrix-method Man page
`%power%`-method Man page
aggregate Man page
aggregate,CompositionMatrix-method Man page
aggregate,GroupedComposition-method Man page
aggregate.CompositionMatrix Source code
aggregate.GroupedComposition Source code
aitchison Source code
all_assigned Man page
all_assigned,ReferenceGroups-method Man page
alr_base Source code
any_assigned Man page
any_assigned,ReferenceGroups-method Man page
any_assigned-method Man page
arctic Man page
arithmetic Man page
as.data.frame Man page
as.data.frame,CompositionMatrix-method Man page
as.data.frame,LogRatio-method Man page
as.data.frame,OutlierIndex-method Man page
as.data.frame.CompositionMatrix Source code
as.data.frame.LogRatio Source code
as.data.frame.OutlierIndex Source code
as_amounts Man page
as_amounts,CompositionMatrix-method Man page
as_amounts-method Man page
as_composition Man page
as_composition,data.frame-method Man page
as_composition,matrix-method Man page
as_composition,numeric-method Man page
as_composition-method Man page
as_graph Man page
as_graph,ALR-method Man page
as_graph,ILR-method Man page
as_graph,LR-method Man page
as_graph-method Man page
barplot Man page
barplot,CompositionMatrix-method Man page
barplot.CompositionMatrix Source code
bind Man page
boxite Man page
boxplot Man page
boxplot,GroupedLogRatio-method Man page
boxplot,LogRatio-method Man page
boxplot.GroupedLogRatio Source code
boxplot.LogRatio Source code
chemistry Man page
closure Man page
closure,matrix-method Man page
closure,numeric-method Man page
closure-method Man page
clr_base Source code
color Man page
compute_groups Source code
condense Man page
condense,CompositionMatrix-method Man page
condense,GroupedComposition-method Man page
condense-method Man page
covariance Man page
covariance,ALR-method Man page
covariance,CLR-method Man page
covariance,CompositionMatrix-method Man page
covariance-method Man page
coxite Man page
describe Man page
describe,CompositionMatrix-method Man page
describe,GroupedComposition-method Man page
describe_check Source code
describe_coda Source code
describe_groups Source code
describe_missing Source code
detect_outlier Man page
detect_outlier,CompositionMatrix,CompositionMatrix-method Man page
detect_outlier,CompositionMatrix,missing-method Man page
detect_outlier-method Man page
dist Man page
dist,CompositionMatrix-method Man page
dist.CompositionMatrix Source code
flatten_chr Source code
get Man page
get_transformation Source code
gmean Man page Source code
group Man page
group,CompositionMatrix-method Man page
group,GroupedComposition-method Man page
group-method Man page
group_factor Man page
group_factor,ReferenceGroups-method Man page
group_factor-method Man page
group_indices Man page
group_indices,ReferenceGroups-method Man page
group_indices-method Man page
group_levels Man page
group_levels,ReferenceGroups-method Man page
group_levels-method Man page
group_n Man page
group_n,ReferenceGroups-method Man page
group_n-method Man page
group_names Man page
group_names,ReferenceGroups-method Man page
group_names-method Man page
group_rows Man page
group_rows,ReferenceGroups-method Man page
group_rows-method Man page
group_size Man page
group_size,ReferenceGroups-method Man page
group_size-method Man page
group_split Man page
group_split,GroupedComposition-method Man page
group_split,GroupedLogRatio-method Man page
group_split-method Man page
group_subset Man page
group_subset,GroupedComposition-method Man page
group_subset,GroupedLogRatio-method Man page
group_subset-method Man page
has_rownames Source code
height2line Source code
hist Man page
hist,CompositionMatrix-method Man page
hist.CompositionMatrix Source code
hongite Man page
ilr_base Source code
is_assigned Man page
is_assigned,ReferenceGroups-method Man page
is_assigned-method Man page
is_chemical Source code
is_composition Man page Source code
is_element_major Man page
is_element_major,CompositionMatrix-method Man page
is_element_major-method Man page
is_element_minor Man page
is_element_minor,CompositionMatrix-method Man page
is_element_minor-method Man page
is_element_trace Man page
is_element_trace,CompositionMatrix-method Man page
is_element_trace-method Man page
is_grouped Man page Source code
is_logratio Man page Source code
is_ordered Source code
is_outlier Man page
is_outlier,OutlierIndex-method Man page
is_outlier-method Man page
is_oxide Man page
is_oxide,CompositionMatrix-method Man page
is_oxide,character-method Man page
is_oxide-method Man page
kongite Man page
label_chemical Source code
label_percent Source code
labels Man page
labels,CompositionMatrix-method Man page
labels,LogRatio-method Man page
labels.CompositionMatrix Source code
labels.LogRatio Source code
lava Man page
lra Man page
mahalanobis Man page
mahalanobis,CompositionMatrix-method Man page
mahalanobis,ILR-method Man page
mahalanobis.CompositionMatrix Source code
mahalanobis.ILR Source code
make_names Source code
make_weights Source code
margin Man page
margin,CompositionMatrix-method Man page
margin-method Man page
mean Man page
mean,CompositionMatrix-method Man page
mean.CompositionMatrix Source code
missing Man page
missingORnull Source code
missing_multiplicative Source code
mix Man page
mix,dist,dist-method Man page
mix,matrix,matrix-method Man page
mix-method Man page
nexus Man page
nexus-package Man page
norm Source code
pairs Man page
pairs,CompositionMatrix-method Man page
pairs,GroupedComposition-method Man page
pairs.CompositionMatrix Source code
pairs.GroupedComposition Source code
palette_color_continuous Man page
palette_color_discrete Man page
palette_color_picker Man page
palette_line Man page
palette_shape Man page
palette_size_diverging Man page
palette_size_sequential Man page
pca Man page
pca,CompositionMatrix-method Man page
pca,LogRatio-method Man page
perturbation Man page
perturbation,CompositionMatrix,CompositionMatrix-method Man page
perturbation,CompositionMatrix,matrix-method Man page
perturbation,CompositionMatrix,numeric-method Man page
perturbation,numeric,numeric-method Man page
perturbation-method Man page
pip Man page
pip,CompositionMatrix-method Man page
pip-method Man page
plot Man page
plot,GroupedLogRatio,missing-method Man page
plot,LogRatio,missing-method Man page
plot,OutlierIndex,missing-method Man page
plot.GroupedLogRatio Source code
plot.LogRatio Source code
plot.OutlierIndex Source code
plot_outlier Man page
powering Man page
powering,CompositionMatrix,numeric-method Man page
powering,numeric,numeric-method Man page
powering-method Man page
predator Man page
prepare_barplot Source code
quantile Man page
quantile,CompositionMatrix-method Man page
quantile.CompositionMatrix Source code
rbind2,CompositionMatrix,CompositionMatrix-method Man page
rbind2,GroupedComposition,GroupedComposition-method Man page
reexports Man page
remove_NA Man page
remove_zero Man page
replace_NA Man page
replace_NA,CompositionMatrix-method Man page
replace_zero Man page
replace_zero,CompositionMatrix-method Man page
scalar Man page
scalar,CompositionMatrix,CompositionMatrix-method Man page
scalar,numeric,numeric-method Man page
scalar-method Man page
scale Man page
scale,CompositionMatrix-method Man page
scale.CompositionMatrix Source code
set Man page
slides Man page
split,CompositionMatrix-method Man page
split,LogRatio-method Man page
split.CompositionMatrix Source code
split.LogRatio Source code
subset Man page
t Man page
t,CompositionMatrix-method Man page
t,LogRatio-method Man page
totals Man page
totals,CompositionMatrix-method Man page
totals,LogRatio-method Man page
totals-method Man page
totals<- Man page
totals<-,CompositionMatrix-method Man page
tr_ Source code
transform_alr Man page
transform_alr,CLR-method Man page
transform_alr,CompositionMatrix-method Man page
transform_alr,GroupedCLR-method Man page
transform_alr,GroupedComposition-method Man page
transform_alr-method Man page
transform_clr Man page
transform_clr,ALR-method Man page
transform_clr,CompositionMatrix-method Man page
transform_clr,GroupedALR-method Man page
transform_clr,GroupedComposition-method Man page
transform_clr-method Man page
transform_ilr Man page
transform_ilr,ALR,missing-method Man page
transform_ilr,ALR-method Man page
transform_ilr,CLR,missing-method Man page
transform_ilr,CLR-method Man page
transform_ilr,CompositionMatrix,missing-method Man page
transform_ilr,CompositionMatrix-method Man page
transform_ilr,GroupedALR,missing-method Man page
transform_ilr,GroupedALR-method Man page
transform_ilr,GroupedCLR,missing-method Man page
transform_ilr,GroupedCLR-method Man page
transform_ilr,GroupedComposition,missing-method Man page
transform_ilr,GroupedComposition-method Man page
transform_ilr-method Man page
transform_inverse Man page
transform_inverse,ALR,missing-method Man page
transform_inverse,CLR,missing-method Man page
transform_inverse,GroupedALR,missing-method Man page
transform_inverse,GroupedCLR,missing-method Man page
transform_inverse,GroupedILR,missing-method Man page
transform_inverse,ILR,missing-method Man page
transform_inverse,matrix,ILR-method Man page
transform_inverse-method Man page
transform_lr Man page
transform_lr,CompositionMatrix-method Man page
transform_lr,GroupedComposition-method Man page
transform_lr-method Man page
transform_plr Man page
transform_plr,CompositionMatrix-method Man page
transform_plr,GroupedComposition-method Man page
transform_plr-method Man page
ungroup Man page
ungroup,GroupedALR-method Man page
ungroup,GroupedCLR-method Man page
ungroup,GroupedComposition-method Man page
ungroup,GroupedILR-method Man page
ungroup,GroupedLR-method Man page
ungroup,GroupedPLR-method Man page
univariate_ilr Man page
univariate_ilr,matrix-method Man page
univariate_ilr,numeric-method Man page
univariate_ilr-method Man page
validate_groups Source code
variance Man page
variance,LogRatio-method Man page
variance-method Man page
variance_total Man page
variance_total,CompositionMatrix-method Man page
variance_total,LogRatio-method Man page
variance_total-method Man page
variation Man page
variation,CompositionMatrix-method Man page
variation-method Man page
weights Man page
weights,ALR-method Man page
weights,LR-method Man page
weights,LogRatio-method Man page
weights.ALR Source code
weights.LR Source code
weights.LogRatio Source code
width2line Source code
wrong_dimensions Source code
zero_multiplicative Source code
nexus documentation built on June 8, 2025, 11:12 a.m.

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