compareOrig | function to compare the original matrix of correct classes to... |
confusionMatrix.nlcv | compute a confusion matrix for the optimal number of features... |
inTrainingSample | Function to define a learning sample based on balanced... |
limmaTwoGroups | Wrapper around limma for the comparison of two groups |
mcrPlot | Misclassification Rate Plot |
nlcv | Nested Loop Cross-Validation |
nlcvRF_R | nlcv results on random data with random forest feature... |
nlcvRF_SHS | nlcv results on strong hetero signal data with random forest... |
nlcvRF_SS | nlcv results on strong signal data a with random forest... |
nlcvRF_WHS | nlcv results on weak signal data with random forest feature... |
nlcvRF_WS | nlcv results on weak hetero signal data with random forest... |
nlcvTT_R | nlcv results on random data with t-test feature selection |
nlcvTT_SHS | nlcv results on strong hetero signal data with t-test feature... |
nlcvTT_SS | nlcv results on strong signal data a with t-test feature... |
nlcvTT_WHS | nlcv results on weak signal data with t-test feature... |
nlcvTT_WS | nlcv results on weak hetero signal data with t-test feature... |
nldaI | new MLInterfaces schema for lda from MASS |
pamrI | Instance of a learnerSchema for pamr models |
pamrIconverter | convert from 'pamrML' to 'classifierOutput' |
pamrML | Wrapper function around the pamr.* functions |
pamrTrain | Function providing a formula interface to pamr.train |
predict.pamrML | predict 'pamrML' object |
print.nlcvConfusionMatrix | print object 'nlcvConfusionMatrix' |
print.pamrML | print 'pamrML' object |
print.summary.mcrPlot | 'print' function for 'summary.mcrPlot' object |
rankDistributionPlot | Plot the Distribution of Ranks of Features Across nlcv Runs |
rocPlot | Produce a ROC plot for a classification model belonging to a... |
scoresPlot | Function to Plot a Scores Plot |
summary.mcrPlot | 'summary' function for 'mcrPlot' object |
topTable-methods | Methods for topTable |
xtable.confusionMatrix | xtable method for confusionMatrix objects |
xtable.summary.mcrPlot | xtable method for summary.mcrPlot objects |
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