limmaTwoGroups: Wrapper around limma for the comparison of two groups
In nlcv: Nested Loop Cross Validation
Description
Usage
Arguments
Details
Value
Author(s)
References
Description
Wrapper around limma for the comparison of two groups
Usage
1
limmaTwoGroups(object, group)
Arguments
object
object of class ExpressionSet
group
string indicating the variable defining the two groups to be
compared
Details
Basically, the wrapper combines the lmFit, eBayes and
topTable steps
Value
topTable output for the second (i.e. slope) coefficient of
the linear model.
Author(s)
Tobias Verbeke
References
Smyth, G. K. (2004). Linear models and empirical Bayes methods
for assessing differential expression in microarray experiments.
Statistical Applications in Genetics and Molecular Biology, Vol. 3,
No. 1, Article 3.
http://www.bepress.com/sagmb/vol3/iss1/art3
nlcv documentation built on July 2, 2018, 1:03 a.m.
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Description Usage Arguments Details Value Author(s) References
Description
Wrapper around limma for the comparison of two groups
Usage
1 | limmaTwoGroups(object, group)
|
Arguments
object |
object of class ExpressionSet |
group |
string indicating the variable defining the two groups to be compared |
Details
Basically, the wrapper combines the lmFit, eBayes and
topTable steps
Value
topTable output for the second (i.e. slope) coefficient of
the linear model.
Author(s)
Tobias Verbeke
References
Smyth, G. K. (2004). Linear models and empirical Bayes methods for assessing differential expression in microarray experiments. Statistical Applications in Genetics and Molecular Biology, Vol. 3, No. 1, Article 3.
http://www.bepress.com/sagmb/vol3/iss1/art3
nlcv documentation built on July 2, 2018, 1:03 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
As an Amazon Associate I earn from qualifying purchases.
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