Nothing
## ---- include = FALSE---------------------------------------------------------
knitr::opts_chunk$set(
message = FALSE,
echo = FALSE,
warning = FALSE,
eval = FALSE,
collapse = TRUE,
comment = "#>"
)
## ---- eval=TRUE, echo=TRUE----------------------------------------------------
library(nlmixr2rpt)
library(onbrand)
obnd = read_template(
template = system.file(package="nlmixr2rpt", "templates","nlmixr_obnd_template.docx"),
mapping = system.file(package="nlmixr2rpt", "templates","nlmixr_obnd_template.yaml"))
## ---- eval=TRUE, echo=TRUE----------------------------------------------------
fit = fetch_fit_example()
## ---- eval=TRUE, echo=TRUE----------------------------------------------------
rptdetails = yaml_read_fit(
obnd = obnd,
rptyaml = system.file(package="nlmixr2rpt", "examples", "report_fit_test.yaml"),
fit = fit)$rptdetails
## ---- eval=TRUE, echo=TRUE, results=FALSE, warning=FALSE, message=FALSE-------
bfres = build_figures(obnd = obnd,
fit = fit,
rptdetails = rptdetails)
btres = build_tables(obnd = obnd,
fit = fit,
rptdetails = rptdetails)
## ---- eval=TRUE, echo=TRUE, results=FALSE, warning=FALSE----------------------
fig_path = bfres$rptfigs$dv_vs_pred$figure[[1]]
fig_title = bfres$rptfigs$dv_vs_pred$title_proc
## ---- eval=FALSE, echo=TRUE, results=FALSE, warning=FALSE---------------------
# ![`r fig_title`](`r fig_path`){width=80%}
## ---- eval=TRUE, echo=TRUE, results=TRUE, warning=FALSE----------------------
tab_ft = btres$rpttabs$pest_table$table$ft[[1]]
tab_title = btres$rpttabs$pest_table$title_proc
tab_ft_knit = flextable::set_caption(tab_ft, caption = tab_title)
tab_ft_knit
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