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nodeSub: Simulate DNA Alignments Using Node Substitutions
Simulate DNA sequences for the node substitution model. In the node substitution model, substitutions accumulate additionally during a speciation event, providing a potential mechanistic explanation for substitution rate variation. This package provides tools to simulate such a process, simulate a reference process with only substitutions along the branches, and provides tools to infer phylogenies from alignments. More information can be found in Janzen (2021) <doi:10.1093/sysbio/syab085>.
Getting started
Browse package contents
Package details |
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| Author | Thijs Janzen |
| Maintainer | Thijs Janzen <thijsjanzen@gmail.com> |
| License | GPL-3 |
| Version | 1.2.8 |
| URL | https://github.com/thijsjanzen/nodeSub |
| Package repository | View on CRAN |
| Installation |
Install the latest version of this package by entering the following in R:
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