API for nodeSub
Simulate DNA Alignments Using Node Substitutions
| Global functions | |
|---|---|
| ab | Source code |
| ab_n | Source code |
| calc_accumulated_substitutions | Source code |
| calc_all_stats | Source code |
| calc_beta | Source code |
| calc_dist | Source code |
| calc_expected_hidden_nodes | Man page Source code |
| calc_fraction | Man page Source code |
| calc_gamma | Source code |
| calc_mean_branch_length | Source code |
| calc_num_tips | Source code |
| calc_required_node_time | Man page Source code |
| calc_sum_stats | Man page Source code |
| calc_tree_height | Source code |
| count_hidden | Man page Source code |
| create_balanced_tree | Man page Source code |
| create_equal_alignment | Man page Source code |
| create_equal_alignment_explicit | Man page Source code |
| create_unbalanced_tree | Man page Source code |
| draw_bases | Source code |
| estimate_marginal_models | Man page Source code |
| fast.table | Source code |
| get_marg_lik | Source code |
| get_mutated_sequences | Source code |
| get_p_m_rcpp | Source code |
| get_p_matrix | Man page Source code |
| infer_phylogeny | Man page Source code |
| make_transition_matrix | Source code |
| mutate_seq_explicit | Source code |
| nodeSub | Man page |
| nodeSub-package | Man page |
| p_n | Source code |
| phyDat.DNA | Source code |
| pick_rate | Source code |
| reduce_tree | Man page Source code |
| sim_linked | Man page Source code |
| sim_normal | Man page Source code |
| sim_normal_explicit | Man page Source code |
| sim_unlinked | Man page Source code |
| sim_unlinked_explicit | Man page Source code |
| slow_matrix | Man page Source code |
