API for nodeSub
Simulate DNA Alignments Using Node Substitutions

Global functions
ab Source code
ab_n Source code
calc_accumulated_substitutions Source code
calc_all_stats Source code
calc_beta Source code
calc_dist Source code
calc_expected_hidden_nodes Man page Source code
calc_fraction Man page Source code
calc_gamma Source code
calc_mean_branch_length Source code
calc_num_tips Source code
calc_required_node_time Man page Source code
calc_sum_stats Man page Source code
calc_tree_height Source code
count_hidden Man page Source code
create_balanced_tree Man page Source code
create_equal_alignment Man page Source code
create_equal_alignment_explicit Man page Source code
create_unbalanced_tree Man page Source code
draw_bases Source code
estimate_marginal_models Man page Source code
fast.table Source code
get_marg_lik Source code
get_mutated_sequences Source code
get_p_m_rcpp Source code
get_p_matrix Man page Source code
infer_phylogeny Man page Source code
make_transition_matrix Source code
mutate_seq_explicit Source code
nodeSub Man page
nodeSub-package Man page
p_n Source code
phyDat.DNA Source code
pick_rate Source code
reduce_tree Man page Source code
sim_linked Man page Source code
sim_normal Man page Source code
sim_normal_explicit Man page Source code
sim_unlinked Man page Source code
sim_unlinked_explicit Man page Source code
slow_matrix Man page Source code
nodeSub documentation built on Aug. 19, 2022, 5:23 p.m.