calc_expected_hidden_nodes: Calculate the number of expected hidden nodes in a...
In nodeSub: Simulate DNA Alignments Using Node Substitutions
View source: R/calc_rel_contr_node_time.R
calc_expected_hidden_nodes R Documentation
Calculate the number of expected hidden nodes in a phylogenetic tree
Description
Calculate the number of expected hidden nodes
using equation 1 in Manceau et al. 2020
Usage
calc_expected_hidden_nodes(phy, lambda = NULL, mu = NULL)
Arguments
phy
phylogenetic tree
lambda
birth rate
mu
death rate
Value
expected number of hidden nodes
References
Manceau, M., Marin, J., Morlon, H., & Lambert, A. (2020).
Model-based inference of punctuated molecular evolution.
Molecular Biology and Evolution, 37(11), 3308-3323.
nodeSub documentation built on Nov. 14, 2023, 5:10 p.m.
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View source: R/calc_rel_contr_node_time.R
| calc_expected_hidden_nodes | R Documentation |
Calculate the number of expected hidden nodes in a phylogenetic tree
Description
Calculate the number of expected hidden nodes using equation 1 in Manceau et al. 2020
Usage
calc_expected_hidden_nodes(phy, lambda = NULL, mu = NULL)
Arguments
phy |
phylogenetic tree |
lambda |
birth rate |
mu |
death rate |
Value
expected number of hidden nodes
References
Manceau, M., Marin, J., Morlon, H., & Lambert, A. (2020). Model-based inference of punctuated molecular evolution. Molecular Biology and Evolution, 37(11), 3308-3323.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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