Global functions | |
---|---|
ab | Source code |
ab_n | Source code |
calc_accumulated_substitutions | Source code |
calc_all_stats | Source code |
calc_beta | Source code |
calc_dist | Source code |
calc_expected_hidden_nodes | Man page Source code |
calc_fraction | Man page Source code |
calc_gamma | Source code |
calc_mean_branch_length | Source code |
calc_num_tips | Source code |
calc_required_node_time | Man page Source code |
calc_sum_stats | Man page Source code |
calc_tree_height | Source code |
count_hidden | Man page Source code |
create_balanced_tree | Man page Source code |
create_equal_alignment | Man page Source code |
create_equal_alignment_explicit | Man page Source code |
create_unbalanced_tree | Man page Source code |
draw_bases | Source code |
estimate_marginal_models | Man page Source code |
fast.table | Source code |
get_marg_lik | Source code |
get_mutated_sequences | Source code |
get_p_m_rcpp | Source code |
get_p_matrix | Man page Source code |
infer_phylogeny | Man page Source code |
make_transition_matrix | Source code |
mutate_seq_explicit | Source code |
nodeSub | Man page |
nodeSub-package | Man page |
p_n | Source code |
phyDat.DNA | Source code |
pick_rate | Source code |
reduce_tree | Man page Source code |
sim_linked | Man page Source code |
sim_normal | Man page Source code |
sim_normal_explicit | Man page Source code |
sim_unlinked | Man page Source code |
sim_unlinked_explicit | Man page Source code |
slow_matrix | Man page Source code |
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