nodiv: Compares the Distribution of Sister Clades Through a Phylogeny

An implementation of the nodiv algorithm, see Borregaard, M.K., Rahbek, C., Fjeldsaa, J., Parra, J.L., Whittaker, R.J. & Graham, C.H. 2014. Node-based analysis of species distributions. Methods in Ecology and Evolution 5(11): 1225-1235. <DOI:10.1111/2041-210X.12283>. Package for phylogenetic analysis of species distributions. The main function goes through each node in the phylogeny, compares the distributions of the two descendant nodes, and compares the result to a null model. This highlights nodes where major distributional divergence have occurred. The distributional divergence for these nodes is mapped using the SOS statistic.

AuthorMichael Krabbe Borregaard
Date of publication2017-02-27 21:40:44
MaintainerMichael Krabbe Borregaard <mkborregaard@snm.ku.dk>
LicenseGPL-3
Version1.1.6

View on CRAN

Functions

add_shape Man page
add_sitestat Man page
add_species_stat Man page
assemblage Man page
basal_node Man page
coords Man page
coquettes Man page
Descendants Man page
distrib_data Man page
GND Man page
gridData Man page
identify.distrib_data Man page
MostRecentAncestor Man page
Node_analysis Man page
nodenumbers Man page
Node_occupancy Man page
nodes Man page
Nodesig Man page
Node_sites Man page
Node_size Man page
Node_species Man page
nodiv Man page
nodiv_data Man page
nodiv-package Man page
nodiv_result Man page
Nsites Man page
Nspecies Man page
occupancy Man page
occurrences Man page
Parent Man page
phyplot Man page
plot.distrib_data Man page
plot_grid Man page
plot_node Man page
plot_nodes_phylo Man page
plot.nodiv_data Man page
plot.nodiv_result Man page
plot_points Man page
plot_richness Man page
plot_sitestat Man page
plotSOS Man page
plot_species Man page
print.distrib_data Man page
print.nodiv_data Man page
print.nodiv_result Man page
print.summary_nodiv_result Man page
read.tree Man page
richness Man page
Sister Man page
sites Man page
sitestat Man page
SOS Man page
species Man page
species_stat Man page
subsample Man page
subsample.distrib_data Man page
subsample.nodiv_data Man page
subsample.nodiv_result Man page
summary.distrib_data Man page
summary.nodiv_data Man page
summary.nodiv_result Man page
two_color_map Man page
update_object Man page

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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