noia: Implementation of the Natural and Orthogonal InterAction (NOIA) model

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The NOIA model, as described extensively in Alvarez-Castro & Carlborg (2007), is a framework facilitating the estimation of genetic effects and genotype-to-phenotype maps. This package provides the basic tools to perform linear and multilinear regressions from real populations (provided the phenotype and the genotype of every individuals), estimating the genetic effects from different reference points, the genotypic values, and the decomposition of genetic variances in a multi-locus, 2 alleles system. This package is presented in Le Rouzic & Alvarez-Castro (2008).

Author
Arnaud Le Rouzic (2007-2014), Arne B. Gjuvsland (2010), Olivier Ariste (2010)
Date of publication
2015-01-08 18:21:15
Maintainer
Arnaud Le Rouzic <lerouzic@legs.cnrs-gif.fr>
License
GPL-2
Version
0.97.1

View on CRAN

Man pages

A_noia-package
Implementation of the Natural and Orthogonal InterAction...
B_geneticRegression
Linear and Multilinear Genetic Regressions
C_GPmapanalysis
Noia analysis of genotype-to-phenotype (GP) maps in ideal...
effectsNames
Names of Genetic Effects
geneticEffects
Genetic Effects
genotypesNames
Names of Genotypes
GPmap
Genotype-to-Phenotype Mapping
plotNoia
Graphical display of genetic regressions and...
printNoia
Printing Genetic Regressions and GP map analyses
simulatePop
Simulates a Population from a Genotype-Phenotype Map
varianceDecomposition
Decomposition of Genetic Variance

Files in this package

noia
noia/NAMESPACE
noia/data
noia/data/genotypesNames.rda
noia/data/effectsNames.rda
noia/R
noia/R/plot.noia.linear.R
noia/R/genNamesAppend.R
noia/R/genZ2ZS.R
noia/R/print.noia.common.R
noia/R/startingValuesMultilinear.R
noia/R/startingValues.R
noia/R/effectsPvalues.R
noia/R/reconstructLinearEffects.R
noia/R/print.noia.vardec.R
noia/R/startingValuesNothing.R
noia/R/genZ2S.R
noia/R/print.noia.linear.gpmap.R
noia/R/genZ2X.R
noia/R/GPmap.R
noia/R/statusMaxLevel.R
noia/R/checkgenZ.R
noia/R/plottwoloci.R
noia/R/freqmat2Sgenofreq.R
noia/R/effectsNamesGeneral.R
noia/R/startingValuesLinear.R
noia/R/gen2genZ.R
noia/R/genZ2Z.R
noia/R/recomputeG.R
noia/R/Sloc.R
noia/R/partialX.R
noia/R/linearGPmapanalysis.R
noia/R/varianceDecomposition.R
noia/R/statusMaxDom.R
noia/R/formulaMultilinear.R
noia/R/effectsStdErr.R
noia/R/print.noia.multilinear.R
noia/R/preparelinearGPmap.R
noia/R/effectsVariances.R
noia/R/genNames.R
noia/R/isolateLoc.R
noia/R/drawGenotype.R
noia/R/effectsSelect.R
noia/R/startingValuesReg.R
noia/R/barplot.noia.gpmap.R
noia/R/multilinearRegression.R
noia/R/Z2freq.R
noia/R/print.noia.linear.R
noia/R/linearRegression.R
noia/R/genZ2freq.R
noia/R/plotlocus.R
noia/R/geneticEffects.R
noia/R/simulatePop.R
noia/R/effNames.R
noia/R/bilinearStep.R
noia/R/effectsNamesMultilinear.R
noia/R/gen2Z.R
noia/R/prepareRegression.R
noia/R/freqmat2Sgenofreqloc.R
noia/MD5
noia/DESCRIPTION
noia/man
noia/man/printNoia.Rd
noia/man/geneticEffects.Rd
noia/man/effectsNames.Rd
noia/man/C_GPmapanalysis.Rd
noia/man/varianceDecomposition.Rd
noia/man/simulatePop.Rd
noia/man/GPmap.Rd
noia/man/plotNoia.Rd
noia/man/B_geneticRegression.Rd
noia/man/genotypesNames.Rd
noia/man/A_noia-package.Rd