plotNoia: Graphical display of genetic regressions and...

In noia: Implementation of the Natural and Orthogonal InterAction (NOIA) Model

Graphical display of genetic regressions and genotype-phenotype maps

Description

These functions allow a graphic representation of the result of genetic regressions from linearRegression and GPmap.

Usage

## S3 method for class 'noia.linear'
plot(x, loc = 1:x$nloc, effect=TRUE, epistasis = TRUE, 
ylim=range(GPmap(x)[,1]) + c(-1,1)*max(GPmap(x)[,2]), ...)
## S3 method for class 'noia.gpmap'
barplot(height, GPcol = c("indianred", "palegreen", "royalblue"), 
arrowscol = "purple", stderr = TRUE , main=NA, ylab=NA, ...)

Arguments

x	An object of class "noia.linear" for the plot function, or of class "noia.gpmap" for the barplot function.
loc	The vector loci to plot (by default, all of them are displayed).
effect	Whether genetic effects have to be plotted for each locus.
epistasis	Whether pairwise effects have to be plotted.
height	An object of class "noia.gpmap".
GPcol	Colors for each of the three genotypes.
arrowscol	Color of the error bars.
stderr	If TRUE, error bars stand for starndard errors. Otherwise, error bars are 95% condidence intervals.
main	The same as in plot.
ylab	The same as in plot.
ylim	The same as in plot.
...	Additional options for the plot and barplot routines.

Author(s)

Olivier Ariste, Arnaud Le Rouzic

noia documentation built on March 31, 2023, 6:45 p.m.