oXim: Oxycline Index from Matrix Echograms

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Tools for oxycline depth calculation from echogram matrices.

Author
Wencheng Lau-Medrano [aut, cre], Ricardo Oliveros-Ramos [ctb]
Date of publication
2016-12-03 12:19:57
Maintainer
Wencheng Lau-Medrano <luis.laum@gmail.com>
License
GPL (>= 2)
Version
1.1.0
URLs

View on CRAN

Man pages

colPalette
Default color palette most using on acostic echograms.
createFilterSetting
Create filter-settings Object.
defaultFilterSettings
Default set of filter parameters.
echogramPlot
Plot a matrix of a filtered echogram.
echogramPlot.echoData
echogramPlot method for echoData
echogramPlot.oxyclineData
echogramPlot method for oxyclineData
getOxyrange
Takes a matrix of echogram and calculate Oxycline.
oXim-package
Oxycline Index from Matrix Echograms
plot.echoData
Plot method for echoData Objects.
plot.oxyclineData
Plot method for oxyclineData
print.echoData
Print method for echoData Objects.
print.oxyclineData
Print method for oxyclineData Objects.
print.summary.echoData
Print method for summary.echoData
print.summary.oxyclineData
Print method for summary.oxyclineData
readEchograms
Takes outputs from Echopen and generates a matrix to...
summary.echoData
Summary method for echoData
summary.oxyclineData
Summary method for oxyclineData Objects.

Files in this package

oXim
oXim/inst
oXim/inst/extdata
oXim/inst/extdata/blue38.mat
oXim/inst/extdata/fish38.mat
oXim/inst/extdata/fluid120.mat
oXim/inst/doc
oXim/inst/doc/vignette.Rmd
oXim/inst/doc/vignette.R
oXim/inst/doc/vignette.html
oXim/NAMESPACE
oXim/demo
oXim/demo/00Index
oXim/demo/calculate_oxycline_limits.R
oXim/demo/methods_oxyclineData.R
oXim/demo/methods_echoData.R
oXim/demo/create_filter_configuration.R
oXim/demo/read_echoData.R
oXim/data
oXim/data/colPalette.RData
oXim/data/defaultFilterSettings.RData
oXim/R
oXim/R/oxyclineData-internal.R
oXim/R/oXim-main.R
oXim/R/echoData-class.R
oXim/R/oXim-internal.R
oXim/R/auxiliar.R
oXim/R/oxyclineData-class.R
oXim/vignettes
oXim/vignettes/vignette_cache
oXim/vignettes/vignette_cache/html
oXim/vignettes/vignette_cache/html/unnamed-chunk-7_9f403fae10ff7304bad716657a27b4e7.RData
oXim/vignettes/vignette_cache/html/unnamed-chunk-7_9f403fae10ff7304bad716657a27b4e7.rdx
oXim/vignettes/vignette_cache/html/unnamed-chunk-3_ccf9ce7567b0d833c5dd0791c366e4a2.rdb
oXim/vignettes/vignette_cache/html/__packages
oXim/vignettes/vignette_cache/html/unnamed-chunk-3_ccf9ce7567b0d833c5dd0791c366e4a2.rdx
oXim/vignettes/vignette_cache/html/unnamed-chunk-7_9f403fae10ff7304bad716657a27b4e7.rdb
oXim/vignettes/vignette_cache/html/unnamed-chunk-3_ccf9ce7567b0d833c5dd0791c366e4a2.RData
oXim/vignettes/vignette.Rmd
oXim/vignettes/vignette_files
oXim/vignettes/vignette_files/figure-html
oXim/vignettes/vignette_files/figure-html/unnamed-chunk-10-1.png
oXim/vignettes/vignette_files/figure-html/unnamed-chunk-6-1.png
oXim/MD5
oXim/build
oXim/build/vignette.rds
oXim/DESCRIPTION
oXim/man
oXim/man/readEchograms.Rd
oXim/man/summary.oxyclineData.Rd
oXim/man/print.summary.oxyclineData.Rd
oXim/man/echogramPlot.echoData.Rd
oXim/man/print.summary.echoData.Rd
oXim/man/plot.oxyclineData.Rd
oXim/man/plot.echoData.Rd
oXim/man/getOxyrange.Rd
oXim/man/print.echoData.Rd
oXim/man/summary.echoData.Rd
oXim/man/echogramPlot.Rd
oXim/man/defaultFilterSettings.Rd
oXim/man/oXim-package.Rd
oXim/man/print.oxyclineData.Rd
oXim/man/echogramPlot.oxyclineData.Rd
oXim/man/colPalette.Rd
oXim/man/createFilterSetting.Rd