ocean: Biophysical Oceanography Tools

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This package contains a set of functions for manipulating and visualizing output from numerical ocean models. Many of the routines are targeted towards Lagrangian particle-tracking models with the data stored in NetCDF files. This package may be useful to spatial marine ecologists and biological or physical oceanographers.

Author
Benjamin Jones [aut, cre]
Date of publication
2014-05-01 07:44:59
Maintainer
Benjamin Jones <btjones16@gmail.com>
License
GPL-3
Version
0.2-4
URLs

View on CRAN

Man pages

bathy.colors
Generate a sequence of colors for plotting bathymetric data.
filter2d
Applies a 2d Gaussian filter to 'mat' with a standard...
find.elem-methods
Checks if the points (xy$x, xy$y) are in the 'fvcom.grid'...
fvcom.grid
Create a new FVCOM grid instance from a FVCOM NetCDF output...
fvcom.grid-class
Finite Volume Community Ocean Model grid
get.depth-methods
Get the depth at each node in the grid.
get.elems-methods
Get the indices of the element vertices in the grid.
get.nelems-methods
Get the number of elements in the grid.
get.nnodes-methods
Get the number of nodes in the grid.
get.nodes-methods
Get the values of the nodes in the grid.
get.proj-methods
Get the value of the projection string.
image-methods
Plot a 'fvcom.grid' instance as a heatmap.
interp-methods
Convert a single scalar or node based quantity to element...
is.in.grid-methods
Checks if the points (xy$x, xy$y) are in the 'fvcom.grid'...
jet.colors
Generate a sequence of colors alog the jet colormap.
lines-methods
Plot an instance of the 'fvcom.grid' class and overlay the...
loadFVCOMGrid27
Load an FVCOM grid from a NetCDF output file.
ocean.demo.grid
An example instance of the 'fvcom.grid' class.
pdd-methods
Plot the density of x and y on grid.
validFVCOMGrid
Check if a 'fvcom.grid' instance is valid.

Files in this package

ocean
ocean/src
ocean/src/ocean.c
ocean/NAMESPACE
ocean/NEWS
ocean/data
ocean/data/ocean_demo_grid.rda
ocean/R
ocean/R/filter2d.R
ocean/R/fvcom_grid.R
ocean/R/color_ramps.R
ocean/MD5
ocean/DESCRIPTION
ocean/man
ocean/man/pdd-methods.Rd
ocean/man/validFVCOMGrid.Rd
ocean/man/lines-methods.Rd
ocean/man/fvcom.grid-class.Rd
ocean/man/interp-methods.Rd
ocean/man/get.nnodes-methods.Rd
ocean/man/is.in.grid-methods.Rd
ocean/man/image-methods.Rd
ocean/man/ocean.demo.grid.Rd
ocean/man/get.proj-methods.Rd
ocean/man/bathy.colors.Rd
ocean/man/loadFVCOMGrid27.Rd
ocean/man/find.elem-methods.Rd
ocean/man/filter2d.Rd
ocean/man/fvcom.grid.Rd
ocean/man/get.nelems-methods.Rd
ocean/man/get.nodes-methods.Rd
ocean/man/jet.colors.Rd
ocean/man/get.elems-methods.Rd
ocean/man/get.depth-methods.Rd