inst/doc/a01_Creating_synthetic_clinical_tables.R

In omock: Creation of Mock Observational Medical Outcomes Partnership Common Data Model

## ----include = FALSE----------------------------------------------------------
knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>"
)

## ----message=FALSE, warning=FALSE---------------------------------------------
library(omock)
library(dplyr)
library(ggplot2)

## -----------------------------------------------------------------------------
cdm <- emptyCdmReference(cdmName = "synthetic cdm") |>
  mockPerson(nPerson = 1000) |>
  mockObservationPeriod()

cdm

cdm$person |> glimpse()

cdm$observation_period |> glimpse()

## -----------------------------------------------------------------------------
cdm <- emptyCdmReference(cdmName = "synthetic cdm") |>
  mockPerson(
    nPerson = 1000,
    birthRange = as.Date(c("1960-01-01", "1980-12-31"))
  ) |>
  mockObservationPeriod()

## -----------------------------------------------------------------------------
cdm$person |>
  collect() |>
  ggplot() +
  geom_histogram(aes(as.integer(year_of_birth)),
    binwidth = 1, colour = "grey"
  ) +
  theme_minimal() +
  xlab("Year of birth")