doVariableSelection: Remove genes with low variation.
In oncoPredict: Drug Response Modeling and Biomarker Discovery
View source: R/CALCPHENOTYPE.R
doVariableSelection R Documentation
Remove genes with low variation.
Description
This function performs variable selection by removing genes with the lowest variance in the datasets.
Usage
doVariableSelection(exprMat, removeLowVaryingGenes = 0.2)
Arguments
exprMat
A matrix of gene expression levels. rownames() are genes, and colnames() are samples.
removeLowVaryingGenes
The proportion of low varying genes to be removed.The default is .2
Value
A vector of row/genes to keep.
oncoPredict documentation built on May 29, 2024, 6:05 a.m.
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View source: R/CALCPHENOTYPE.R
| doVariableSelection | R Documentation |
Remove genes with low variation.
Description
This function performs variable selection by removing genes with the lowest variance in the datasets.
Usage
doVariableSelection(exprMat, removeLowVaryingGenes = 0.2)
Arguments
exprMat |
A matrix of gene expression levels. rownames() are genes, and colnames() are samples. |
removeLowVaryingGenes |
The proportion of low varying genes to be removed.The default is .2 |
Value
A vector of row/genes to keep.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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