opal.taxonomy_download: Download a taxonomy file

In opalr: 'Opal' Data Repository Client and 'DataSHIELD' Utils

Download a taxonomy file

Description

Download a taxonomy stored in a file in YAML format.

Usage

opal.taxonomy_download(opal, taxonomy, destination = NULL)

Arguments

opal	Opal object.
taxonomy	Name of the taxonomy.
destination	Path to the taxonomy YAML file. If not provided, the downloaded file will have the taxonomy name with the '.yml' extension and will be located in the working directory.

See Also

Other taxonomy functions: opal.taxonomies(), opal.taxonomy_delete(), opal.taxonomy_upload(), opal.taxonomy(), opal.terms(), opal.vocabularies(), opal.vocabulary()

Examples

## Not run: 
o <- opal.login('administrator','password', url='https://opal-demo.obiba.org')
opal.taxonomy_download(o, 'Mlstr_area', '~/some/dir/Mlstr_area.yml')
opal.logout(o)

## End(Not run)

opalr documentation built on Oct. 6, 2023, 5:08 p.m.