openVA: Automated Method for Verbal Autopsy

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Implements multiple existing open-source algorithms for coding cause of death from verbal autopsies. It also provides tools for data manipulation tasks commonly used in Verbal Autopsy analysis and implements easy graphical visualization of individual and population level statistics.

Author
Zehang Li, Tyler McCormick, Sam Clark
Date of publication
2016-11-19 21:38:52
Maintainer
Zehang Li <lizehang@uw.edu>
License
GPL-2
Version
1.0.2

View on CRAN

Man pages

codeVA
Running automated method on VA data
ConvertData
Converting Input data with different coding scheme to...
ConvertData.phmrc
Convert standard PHMRC data into binary indicator format
getCSMF
Obtain CSMF from fitted model
getIndivProb
Extract individual distribution of cause of death
getPHMRC_url
Get the URL to the PHMRC dataset
getTopCOD
Extract the most likely cause of death
interVA.train
Extended InterVA method for non-standard input
plotVA
Plot top CSMF for a fitted model
stackplotVA
plot grouped CSMF from a "insilico" object

Files in this package

openVA
openVA/NAMESPACE
openVA/R
openVA/R/interVA.train.r
openVA/R/CSMF.r
openVA/R/ConvertData.r
openVA/R/VAmain.r
openVA/R/stackplot.r
openVA/MD5
openVA/DESCRIPTION
openVA/man
openVA/man/getCSMF.Rd
openVA/man/ConvertData.Rd
openVA/man/getPHMRC_url.Rd
openVA/man/codeVA.Rd
openVA/man/plotVA.Rd
openVA/man/getIndivProb.Rd
openVA/man/ConvertData.phmrc.Rd
openVA/man/interVA.train.Rd
openVA/man/getTopCOD.Rd
openVA/man/stackplotVA.Rd