openVA: Automated Method for Verbal Autopsy
Version 1.0.3

Implements multiple existing open-source algorithms for coding cause of death from verbal autopsies. It also provides tools for data manipulation tasks commonly used in Verbal Autopsy analysis and implements easy graphical visualization of individual and population level statistics.

Browse man pages Browse package API and functions Browse package files

AuthorZehang Li, Tyler McCormick, Sam Clark
Date of publication2017-01-07 20:00:55
MaintainerZehang Li <lizehang@uw.edu>
LicenseGPL-2
Version1.0.3
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("openVA")

Man pages

codeVA: Running automated method on VA data
ConvertData: Converting Input data with different coding scheme to...
ConvertData.phmrc: Convert standard PHMRC data into binary indicator format
getCSMF: Obtain CSMF from fitted model
getCSMF_accuracy: Calculate CSMF accuracy
getIndivProb: Extract individual distribution of cause of death
getPHMRC_url: Get the URL to the PHMRC dataset
getTopCOD: Extract the most likely cause of death
interVA.train: Extended InterVA method for non-standard input
plotVA: Plot top CSMF for a fitted model
stackplotVA: plot grouped CSMF from a "insilico" object

Functions

ConvertData Man page Source code
ConvertData.phmrc Man page Source code
codeVA Man page Source code
getCSMF Man page Source code
getCSMF_accuracy Man page Source code
getIndivProb Man page Source code
getPHMRC_url Man page Source code
getTopCOD Man page Source code
interVA.train Man page Source code
phmrc_adult_convert Source code
plotVA Man page Source code
stackplotVA Man page Source code
toBinary_cutoff Source code
toBinary_file10 Source code
toBinary_file9 Source code
toBinary_group Source code
toBinary_unhandeled Source code

Files

inst
inst/NEWS.Rd
NAMESPACE
R
R/interVA.train.r
R/CSMF.r
R/ConvertData.r
R/VAmain.r
R/stackplot.r
MD5
DESCRIPTION
man
man/getCSMF.Rd
man/ConvertData.Rd
man/getPHMRC_url.Rd
man/codeVA.Rd
man/plotVA.Rd
man/getIndivProb.Rd
man/ConvertData.phmrc.Rd
man/interVA.train.Rd
man/getTopCOD.Rd
man/stackplotVA.Rd
man/getCSMF_accuracy.Rd
openVA documentation built on May 20, 2017, 1:02 a.m.