getCSMF: Obtain CSMF from fitted model

In openVA: Automated Method for Verbal Autopsy

Obtain CSMF from fitted model

Description

Obtain CSMF from fitted model

Usage

getCSMF(x, CI = 0.95, interVA.rule = TRUE)

Arguments

x	a fitted object from codeVA.
CI	For insilico object only, specifying the credible interval to return. Default value to be 0.95.
interVA.rule	Logical indicator for interVA object only. If TRUE, it means only up to top 3 causes for each death are used to calculate CSMF and the rest are categorized as "undetermined"

Value

a vector or matrix of CSMF for all causes.

See Also

Other output extraction: getCCC(), getCSMF_accuracy(), getIndivProb(), getTopCOD()

Examples

## Not run: 
library(InSilicoVA)
data(RandomVA1)
# for illustration, only use interVA on 100 deaths
fit <- codeVA(RandomVA1[1:100, ], data.type = "WHO2012", model = "InterVA", 
                  version = "4.03", HIV = "h", Malaria = "l", write=FALSE)
getCSMF(fit)
library(InterVA5)
data(RandomVA5)
fit <- codeVA(RandomVA5[1:100, ], data.type = "WHO2016", model = "InterVA", 
                  version = "5", HIV = "h", Malaria = "l", write=FALSE)
getCSMF(fit)

## End(Not run)

openVA documentation built on March 31, 2023, 9:31 p.m.