oro.nifti: Rigorous - NIfTI + ANALYZE + AFNI : Input / Output

Functions for the input/output and visualization of medical imaging data that follow either the ANALYZE, NIfTI or AFNI formats. This package is part of the Rigorous Analytics bundle.

AuthorBrandon Whitcher [aut, cre], Volker Schmid [aut], Andrew Thornton [aut], Karsten Tabelow [ctb], Jon Clayden [ctb], John Muschelli [ctb]
Date of publication2016-12-31 16:32:14
MaintainerBrandon Whitcher <bwhitcher@gmail.com>
LicenseBSD_3_clause + file LICENSE
Version0.7.2
http://rig.oro.us.com
http://rigorousanalytics.blogspot.com

View on CRAN

Man pages

afni-class: Class "afni"

anlz: Constructor for Analyze

anlz-class: Class "anlz"

anlz-nifti-ops: Operations for Objects in the ANALYZE and NIfTI classes

as.anlz: as.anlz

as.nifti: as.nifti

audit_trail: Facilitate the Creation and Modification of Audit Trails

audit_trail-methods: Extract or Replace NIfTI Audit Trail

aux_file-methods: Extract Image Attribute 'aux_file'

bitpix-methods: Extract Image Attribute 'bitpix'

bitwise: Bitwise Conversion Subroutines

blend-methods: Merge Two NIfTI or ANALYZE Volumes

cal_img: Set Minimum/Maximum Values for NIfTI data

cal_max-methods: Extract Image Attribute 'cal_max'

cal_min-methods: Extract Image Attribute 'cal_min'

cal_units-methods: Extract Image Attribute 'cal_units'

coerce-methods: Force an Object to Belong to the ANALYZE or NIfTI Class

compressed-methods: Extract Image Attribute 'compressed'

convert_afni: Convert AFNI data codes

convert_anlz: Convert ANALYZE Codes

convert_nifti: Convert NIfTI Codes

data_type-methods: Extract Image Attribute 'data_type'

datatype-methods: Extract Image Attribute 'datatype'

db_name-methods: Extract Image Attribute 'db_name'

descrip-methods: Extract Image Attribute 'descrip'

dim_info-methods: Extract Image Attribute 'dim_info'

dim_-methods: Extract Image Attribute 'dim_'

dim_un0-methods: Extract Image Attribute 'dim_un0'

drop_img_dim: Drop Image Dimension

exp_date-methods: Extract Image Attribute 'exp_date'

exp_time-methods: Extract Image Attribute 'exp_time'

extender-methods: Extract Image Attribute 'extender'

extents-methods: Extract Image Attribute 'extents'

field_skip-methods: Extract Image Attribute 'field_skip'

funused1-methods: Extract Image Attribute 'funused1'

funused2-methods: Extract Image Attribute 'funused2'

funused3-methods: Extract Image Attribute 'funused3'

generated-methods: Extract Image Attribute 'generated'

glmax-methods: Extract Image Attribute 'glmax'

glmin-methods: Extract Image Attribute 'glmin'

hist_un0-methods: Extract Image Attribute 'hist_un0'

hkey_un0-methods: Extract Image Attribute 'hkey_un0'

hotmetal: Hot Metal Color Table

image-methods: Methods for Function 'image'

img_data-methods: Extract Image Attribute '.Data'

integerTranslation: integerTranslation

intent_code-methods: Extract Image Attribute 'intent_code'

intent_name-methods: Extract Image Attribute 'intent_name'

intent_p1-methods: Extract Image Attribute 'intent_p1'

intent_p2-methods: Extract Image Attribute 'intent_p2'

intent_p3-methods: Extract Image Attribute 'intent_p3'

is_afni: check object

is_anlz: check object

is_nifti: check object

magic-methods: Extract Image Attribute 'magic'

miscellaneous: Dimension Accessor Functions

nifti: Constructor for NIfTI

nifti_assign-methods: Methods for Function [<- in Package 'base'

niftiAuditTrail-class: Class "niftiAuditTrail"

nifti-class: Class "nifti"

niftiExtension-class: Class "niftiExtension"

niftiExtensionSection-class: Class "niftiExtensionSection"

niftiops: Operations for NIfTI Objects

nii2oro: Convert RNifti niftiImage to oro.nifti nifti object

omax-methods: Extract Image Attribute 'omax'

omin-methods: Extract Image Attribute 'omin'

onefile: Creates the 'onefile' Specification for NIfTI

orientation-methods: Extract NIfTI 3D Image Orientation

orient-methods: Extract Image Attribute 'orient'

origin-methods: Extract Image Attribute 'origin'

oro2nii: Convert oro.nifti nifti to RNifti niftiImage object

orthographic-methods: Methods for Function 'orthographic' in Package 'dcemriS4'

overlay-methods: Methods for Function overlay

patient_id-methods: Extract Image Attribute 'patient_id'

performPermutation: Transform array with orthogonal permutation matrix

pixdim-methods: Extract Image Attribute 'pixdim'

qform_code-methods: Extract Image Attribute 'qform_code'

qoffset_x-methods: Extract Image Attribute 'qoffset_x'

qoffset_y-methods: Extract Image Attribute 'qoffset_y'

qoffset_z-methods: Extract Image Attribute 'qoffset_z'

quatern_b-methods: Extract Image Attribute 'quatern_b'

quatern_c-methods: Extract Image Attribute 'quatern_c'

quatern_d-methods: Extract Image Attribute 'quatern_d'

quaternion2rotation: Convert Quaternion into a Rotation Matrix

read_afni: readAFNI

read_anlz: readANALYZE

read_nifti: readNIfTI

regular-methods: Extract Image Attribute 'regular'

remove: Remove File Extensions Around the NIfTI/ANALYZE Formats

reorient: Reorient Image using NIfTI header

scannum-methods: Extract Image Attribute 'scannum'

scl_inter-methods: Extract Image Attribute 'scl_inter'

scl_slope-methods: Extract Image Attribute 'scl_slope'

session_error-methods: Extract Image Attribute 'session_error'

sform_code-methods: Extract Image Attribute 'sform_code'

sizeof_hdr-methods: Extract Image Attribute 'sizeof_hdr'

slice_code-methods: Extract Image Attribute 'slice_code'

slice_duration-methods: Extract Image Attribute 'slice_duration'

slice_end-methods: Extract Image Attribute 'slice_end'

slice_start-methods: Extract Image Attribute 'slice_start'

smax-methods: Extract Image Attribute 'smax'

smin-methods: Extract Image Attribute 'smin'

srow_x-methods: Extract Image Attribute 'srow_x'

srow_y-methods: Extract Image Attribute 'srow_y'

srow_z-methods: Extract Image Attribute 'srow_z'

start_field-methods: Extract Image Attribute 'start_field'

tim_colors: Tim's Useful Color Table

toffset-methods: Extract Image Attribute 'toffset'

transformCoordinate: Translate Voxel Coordinates

unused1-methods: Extract Image Attribute 'unused1'

verified-methods: Extract Image Attribute 'verified'

views-methods: Extract Image Attribute 'views'

vols_added-methods: Extract Image Attribute 'vols_added'

voxdim: Gets Voxel Dimensions

vox_offset-methods: Extract Image Attribute 'vox_offset'

voxres: Gets Voxel Resolution

vox_units-methods: Extract Image Attribute 'vox_units'

write_afni-methods: writeAFNI

write_anlz: writeANALYZE

write_nifti: writeNIfTI

xyzt_units-methods: Extract Image Attribute 'xyzt_units'

zero_trans: Change Intercept to 0 and Slope to 1 in NIfTI Object

Functions

afni-class Man page
anlz Man page
anlz-class Man page
anlz-nifti-ops Man page
[<-,ANY,ANY,ANY,ANY-method Man page
as.anlz Man page
as<-,array,anlz-method Man page
as,array,anlz-method Man page
as<-,array,nifti-method Man page
as,array,nifti-method Man page
as.nifti Man page
audit.trail Man page
audit.trail<- Man page
audit.trail-methods Man page
audit.trail<-,nifti-method Man page
audit.trail,nifti-method Man page
Audit Trails Man page
aux_file Man page
aux_file<- Man page
aux.file Man page
aux.file<- Man page
aux_file<-,anlz-method Man page
aux_file,anlz-method Man page
aux.file<-,anlz-method Man page
aux.file,anlz-method Man page
aux_file-methods Man page
aux_file-methods, Man page
aux_file<-,nifti-method Man page
aux_file,nifti-method Man page
aux.file<-,nifti-method Man page
aux.file,nifti-method Man page
bitpix Man page
bitpix<- Man page
bitpix<-,anlz-method Man page
bitpix,anlz-method Man page
bitpix-methods Man page
bitpix-methods, Man page
bitpix<-,nifti-method Man page
bitpix,nifti-method Man page
blend Man page
blend,anlz,anlz-method Man page
blend,anlz,anlz-methods Man page
blend,anlz,nifti-method Man page
blend,anlz,nifti-methods Man page
blend,nifti,anlz-method Man page
blend,nifti,anlz-methods Man page
blend,nifti,nifti-method Man page
blend,nifti,nifti-methods Man page
blendVolumes Man page
calibrateImage Man page
cal_img Man page
cal_max Man page
cal_max<- Man page
cal.max Man page
cal.max<- Man page
cal_max<-,anlz-method Man page
cal_max,anlz-method Man page
cal.max<-,anlz-method Man page
cal.max,anlz-method Man page
cal_max-methods Man page
cal_max-methods, Man page
cal_max<-,nifti-method Man page
cal_max,nifti-method Man page
cal.max<-,nifti-method Man page
cal.max,nifti-method Man page
cal_min Man page
cal_min<- Man page
cal.min Man page
cal.min<- Man page
cal_min<-,anlz-method Man page
cal_min,anlz-method Man page
cal.min<-,anlz-method Man page
cal.min,anlz-method Man page
cal_min-methods Man page
cal_min-methods, Man page
cal_min<-,nifti-method Man page
cal_min,nifti-method Man page
cal.min<-,nifti-method Man page
cal.min,nifti-method Man page
cal_units Man page
cal_units<- Man page
cal.units Man page
cal.units<- Man page
cal_units<-,anlz-method Man page
cal_units,anlz-method Man page
cal.units<-,anlz-method Man page
cal.units,anlz-method Man page
cal_units-methods Man page
cal_units-methods, Man page
cal.units,nifti-method Man page
coerce<-,anlz,nifti-method Man page
coerce,anlz,nifti-method Man page
coerce<-,array,anlz-method Man page
coerce,array,anlz-method Man page
coerce<-,array,nifti-method Man page
coerce,array,nifti-method Man page
coerce<-,list,anlz-method Man page
coerce,list,anlz-method Man page
coerce<-,list,nifti-method Man page
coerce,list,nifti-method Man page
coerce-methods Man page
compressed Man page
compressed<- Man page
compressed<-,anlz-method Man page
compressed,anlz-method Man page
compressed-methods Man page
compressed-methods, Man page
Convert ANALYZE Codes Man page
convert.bitpix Man page
convert.bitpix.anlz Man page
convert.datatype Man page
convert.datatype.anlz Man page
convert.form Man page
convert.intent Man page
Convert NIfTI Codes Man page
convert.orient.anlz Man page
convert.scene Man page
convert.slice Man page
convert.units Man page
datatype Man page
data_type Man page
data_type<- Man page
data.type Man page
data.type<- Man page
datatype<- Man page
data_type<-,anlz-method Man page
data_type,anlz-method Man page
data.type<-,anlz-method Man page
data.type,anlz-method Man page
datatype<-,anlz-method Man page
datatype,anlz-method Man page
data_type-methods Man page
data_type-methods, Man page
datatype-methods Man page
datatype-methods, Man page
data_type<-,nifti-method Man page
data_type,nifti-method Man page
data.type<-,nifti-method Man page
data.type,nifti-method Man page
datatype<-,nifti-method Man page
datatype,nifti-method Man page
db_name Man page
db_name<- Man page
db.name Man page
db.name<- Man page
db_name<-,anlz-method Man page
db_name,anlz-method Man page
db.name<-,anlz-method Man page
db.name,anlz-method Man page
db_name-methods Man page
db_name-methods, Man page
db_name<-,nifti-method Man page
db_name,nifti-method Man page
db.name<-,nifti-method Man page
db.name,nifti-method Man page
descrip Man page
descrip<- Man page
descrip<-,anlz-method Man page
descrip,anlz-method Man page
descrip-methods Man page
descrip-methods, Man page
descrip<-,nifti-method Man page
descrip,nifti-method Man page
dim_ Man page
dim_<- Man page
dim2freq Man page
dim2phase Man page
dim2slice Man page
dim_<-,anlz-method Man page
dim_,anlz-method Man page
dim_info Man page
dim_info<- Man page
dim_info-methods Man page
dim_info-methods, Man page
dim_info<-,nifti-method Man page
dim_info,nifti-method Man page
dim_-methods Man page
dim_-methods, Man page
dim_<-,nifti-method Man page
dim_,nifti-method Man page
dim_un0 Man page
dim_un0<- Man page
dim_un0<-,anlz-method Man page
dim_un0,anlz-method Man page
dim_un0-methods Man page
dim_un0-methods, Man page
dropImageDimension Man page
drop_img_dim Man page
enableAuditTrail Man page
exp_date Man page
exp_date<- Man page
exp_date<-,anlz-method Man page
exp_date,anlz-method Man page
exp_date-methods Man page
exp_date-methods, Man page
exp_time Man page
exp_time<- Man page
exp_time<-,anlz-method Man page
exp_time,anlz-method Man page
exp_time-methods Man page
exp_time-methods, Man page
extender Man page
extender<- Man page
extender-methods Man page
extender-methods, Man page
extender<-,nifti-method Man page
extender,nifti-method Man page
extents Man page
extents<- Man page
extents<-,anlz-method Man page
extents,anlz-method Man page
extents-methods Man page
extents-methods, Man page
extents<-,nifti-method Man page
extents,nifti-method Man page
field_skip Man page
field_skip<- Man page
field.skip Man page
field.skip<- Man page
field_skip<-,anlz-method Man page
field_skip,anlz-method Man page
field.skip<-,anlz-method Man page
field.skip,anlz-method Man page
field_skip-methods Man page
field_skip-methods, Man page
field.skip,nifti-method Man page
funused1 Man page
funused1<- Man page
funused1<-,anlz-method Man page
funused1,anlz-method Man page
funused1-methods Man page
funused1-methods, Man page
funused2 Man page
funused2<- Man page
funused2<-,anlz-method Man page
funused2,anlz-method Man page
funused2-methods Man page
funused2-methods, Man page
funused3 Man page
funused3<- Man page
funused3<-,anlz-method Man page
funused3,anlz-method Man page
funused3-methods Man page
funused3-methods, Man page
generated Man page
generated<- Man page
generated<-,anlz-method Man page
generated,anlz-method Man page
generated-methods Man page
generated-methods, Man page
getLastCallWithName Man page
glmax Man page
glmax<- Man page
glmax<-,anlz-method Man page
glmax,anlz-method Man page
glmax-methods Man page
glmax-methods, Man page
glmax<-,nifti-method Man page
glmax,nifti-method Man page
glmin Man page
glmin<- Man page
glmin<-,anlz-method Man page
glmin,anlz-method Man page
glmin-methods Man page
glmin-methods, Man page
glmin<-,nifti-method Man page
glmin,nifti-method Man page
hist_un0 Man page
hist_un0<- Man page
hist_un0<-,anlz-method Man page
hist_un0,anlz-method Man page
hist_un0-methods Man page
hist_un0-methods, Man page
hkey_un0 Man page
hkey_un0<- Man page
hkey.un0 Man page
hkey.un0<- Man page
hkey_un0<-,anlz-method Man page
hkey_un0,anlz-method Man page
hkey.un0<-,anlz-method Man page
hkey.un0,anlz-method Man page
hkey_un0-methods Man page
hkey_un0-methods, Man page
hkey.un0,nifti-method Man page
hotmetal Man page
image,afni-method Man page
image,anlz-method Man page
image,ANY-method Man page
image-methods Man page
image.nifti Man page
image,nifti-method Man page
img_data Man page
img_data<- Man page
img_data<-,anlz-method Man page
img_data,anlz-method Man page
img_data,ANY-method Man page
img_data,character-method Man page
img_data-methods Man page
img_data-methods, Man page
img_data<-,nifti-method Man page
img_data,nifti-method Man page
integerTranslation Man page
intent_code Man page
intent_code<- Man page
intent.code Man page
intent.code<- Man page
intent_code-methods Man page
intent_code-methods, Man page
intent_code<-,nifti-method Man page
intent_code,nifti-method Man page
intent.code<-,nifti-method Man page
intent.code,nifti-method Man page
intent_name Man page
intent_name<- Man page
intent.name Man page
intent.name<- Man page
intent_name-methods Man page
intent_name-methods, Man page
intent_name<-,nifti-method Man page
intent_name,nifti-method Man page
intent.name<-,nifti-method Man page
intent.name,nifti-method Man page
intent_p1 Man page
intent_p1<- Man page
intent.p1 Man page
intent.p1<- Man page
intent_p1-methods Man page
intent_p1-methods, Man page
intent_p1<-,nifti-method Man page
intent_p1,nifti-method Man page
intent.p1<-,nifti-method Man page
intent.p1,nifti-method Man page
intent_p2 Man page
intent_p2<- Man page
intent.p2 Man page
intent.p2<- Man page
intent_p2-methods Man page
intent_p2-methods, Man page
intent_p2<-,nifti-method Man page
intent_p2,nifti-method Man page
intent.p2<-,nifti-method Man page
intent.p2,nifti-method Man page
intent_p3 Man page
intent_p3<- Man page
intent.p3 Man page
intent.p3<- Man page
intent_p3-methods Man page
intent_p3-methods, Man page
intent_p3<-,nifti-method Man page
intent_p3,nifti-method Man page
intent.p3<-,nifti-method Man page
intent.p3,nifti-method Man page
inverseReorient Man page
invertIntegerTranslation Man page
is.afni Man page
is.anlz Man page
is.nifti Man page
magic Man page
magic<- Man page
magic-methods Man page
magic-methods, Man page
magic<-,nifti-method Man page
magic,nifti-method Man page
[<--methods Man page
newAuditTrail Man page
nifti Man page
[<-,nifti,ANY,ANY,ANY-method Man page
[<-,nifti,ANY,missing,ANY-method Man page
nifti_assign-methods Man page
niftiAuditTrail-class Man page
niftiAuditTrailCreated Man page
niftiAuditTrailEvent Man page
niftiAuditTrailSystemNode Man page
niftiAuditTrailSystemNodeEvent Man page
niftiAuditTrailToExtension Man page
nifti-class Man page
niftiExtension-class Man page
niftiExtensionSection-class Man page
niftiExtensionToAuditTrail Man page
[<-,nifti,missing,missing,array-method Man page
[<-,nifti,numeric,missing,ANY-method Man page
[<-,nifti,numeric,numeric,ANY-method Man page
nifti-operators Man page
nii2oro Man page
nsli Man page
NSLI Man page
ntim Man page
NTIM Man page
omax Man page
omax<- Man page
omax<-,anlz-method Man page
omax,anlz-method Man page
omax-methods Man page
omax-methods, Man page
omin Man page
omin<- Man page
omin<-,anlz-method Man page
omin,anlz-method Man page
omin-methods Man page
omin-methods, Man page
onefile Man page
Ops,anlz,anlz-method Man page
Ops,anlz,nifti-method Man page
Ops,anlz,numeric-method Man page
Ops,nifti,anlz-method Man page
Ops,nifti,nifti-method Man page
Ops,nifti,numeric-method Man page
Ops,numeric,anlz-method Man page
Ops,numeric,nifti-method Man page
orient Man page
orient<- Man page
orient<-,anlz-method Man page
orient,anlz-method Man page
orientation-methods Man page
orient-methods Man page
orient-methods, Man page
origin Man page
origin<- Man page
origin<-,anlz-method Man page
origin,anlz-method Man page
origin-methods Man page
origin-methods, Man page
oro2nii Man page
oro.nifti.info Man page
orthographic Man page
orthographic,afni-method Man page
orthographic,anlz-method Man page
orthographic,array-method Man page
orthographic-methods Man page
orthographic.nifti Man page
orthographic,nifti-method Man page
overlay Man page
overlay,afni,afni-method Man page
overlay,afni,array-method Man page
overlay,anlz,anlz-method Man page
overlay,anlz,array-method Man page
overlay,anlz,nifti-method Man page
overlay,array,anlz-method Man page
overlay,array,array-method Man page
overlay,array,nifti-method Man page
overlay-methods Man page
overlay.nifti Man page
overlay,nifti,anlz-method Man page
overlay,nifti,array-method Man page
overlay,nifti,nifti-method Man page
patient_id Man page
patient_id<- Man page
patient.id Man page
patient.id<- Man page
patient_id<-,anlz-method Man page
patient_id,anlz-method Man page
patient.id<-,anlz-method Man page
patient.id,anlz-method Man page
patient_id-methods Man page
patient_id-methods, Man page
patient.id,nifti-method Man page
performPermutation Man page
pixdim Man page
pixdim<- Man page
pixdim<-,anlz-method Man page
pixdim,anlz-method Man page
pixdim-methods Man page
pixdim-methods, Man page
pixdim<-,nifti-method Man page
pixdim,nifti-method Man page
qform Man page
qform_code Man page
qform_code<- Man page
qform.code Man page
qform.code<- Man page
qform_code-methods Man page
qform_code-methods, Man page
qform_code<-,nifti-method Man page
qform_code,nifti-method Man page
qform.code<-,nifti-method Man page
qform.code,nifti-method Man page
qform-methods Man page
qform,nifti-method Man page
qoffset_x Man page
qoffset_x<- Man page
qoffset.x Man page
qoffset.x<- Man page
qoffset_x-methods Man page
qoffset_x-methods, Man page
qoffset_x<-,nifti-method Man page
qoffset_x,nifti-method Man page
qoffset.x<-,nifti-method Man page
qoffset.x,nifti-method Man page
qoffset_y Man page
qoffset_y<- Man page
qoffset.y Man page
qoffset.y<- Man page
qoffset_y-methods Man page
qoffset_y-methods, Man page
qoffset_y<-,nifti-method Man page
qoffset_y,nifti-method Man page
qoffset.y<-,nifti-method Man page
qoffset.y,nifti-method Man page
qoffset_z Man page
qoffset_z<- Man page
qoffset.z Man page
qoffset.z<- Man page
qoffset_z-methods Man page
qoffset_z-methods, Man page
qoffset_z<-,nifti-method Man page
qoffset_z,nifti-method Man page
qoffset.z<-,nifti-method Man page
qoffset.z,nifti-method Man page
quatern_b Man page
quatern_b<- Man page
quatern.b Man page
quatern.b<- Man page
quatern_b-methods Man page
quatern_b-methods, Man page
quatern_b<-,nifti-method Man page
quatern_b,nifti-method Man page
quatern.b<-,nifti-method Man page
quatern.b,nifti-method Man page
quatern_c Man page
quatern_c<- Man page
quatern.c Man page
quatern.c<- Man page
quatern_c-methods Man page
quatern_c-methods, Man page
quatern_c<-,nifti-method Man page
quatern_c,nifti-method Man page
quatern.c<-,nifti-method Man page
quatern.c,nifti-method Man page
quatern_d Man page
quatern_d<- Man page
quatern.d Man page
quatern.d<- Man page
quatern_d-methods Man page
quatern_d-methods, Man page
quatern_d<-,nifti-method Man page
quatern_d,nifti-method Man page
quatern.d<-,nifti-method Man page
quatern.d,nifti-method Man page
quaternion2mat44 Man page
quaternion2rotation Man page
readAFNI Man page
readANALYZE Man page
readNIfTI Man page
regular Man page
regular<- Man page
regular<-,anlz-method Man page
regular,anlz-method Man page
regular-methods Man page
regular-methods, Man page
regular<-,nifti-method Man page
regular,nifti-method Man page
reorient Man page
resetSlopeIntercept Man page
rmgz Man page
rmhdr Man page
rmhdrgz Man page
rmimg Man page
rmimggz Man page
rmnii Man page
rmniigz Man page
scannum Man page
scannum<- Man page
scannum<-,anlz-method Man page
scannum,anlz-method Man page
scannum-methods Man page
scannum-methods, Man page
scl_inter Man page
scl_inter<- Man page
scl.inter Man page
scl.inter<- Man page
scl_inter-methods Man page
scl_inter-methods, Man page
scl_inter<-,nifti-method Man page
scl_inter,nifti-method Man page
scl.inter<-,nifti-method Man page
scl.inter,nifti-method Man page
scl_slope Man page
scl_slope<- Man page
scl.slope Man page
scl.slope<- Man page
scl_slope-methods Man page
scl_slope-methods, Man page
scl_slope<-,nifti-method Man page
scl_slope,nifti-method Man page
scl.slope<-,nifti-method Man page
scl.slope,nifti-method Man page
session_error Man page
session_error<- Man page
session.error Man page
session.error<- Man page
session_error<-,anlz-method Man page
session_error,anlz-method Man page
session.error<-,anlz-method Man page
session.error,anlz-method Man page
session_error-methods Man page
session_error-methods, Man page
session_error<-,nifti-method Man page
session_error,nifti-method Man page
session.error<-,nifti-method Man page
session.error,nifti-method Man page
sform Man page
sform_code Man page
sform_code<- Man page
sform.code Man page
sform.code<- Man page
sform_code-methods Man page
sform_code-methods, Man page
sform_code<-,nifti-method Man page
sform_code,nifti-method Man page
sform.code<-,nifti-method Man page
sform.code,nifti-method Man page
sform-methods Man page
sform,nifti-method Man page
show,afni-method Man page
show,anlz-method Man page
show,nifti-method Man page
sizeof_hdr Man page
sizeof.hdr Man page
sizeof_hdr,anlz-method Man page
sizeof.hdr,anlz-method Man page
sizeof_hdr-methods Man page
sizeof_hdr-methods, Man page
sizeof_hdr,nifti-method Man page
sizeof.hdr,nifti-method Man page
slice_code Man page
slice_code<- Man page
slice.code Man page
slice.code<- Man page
slice_code-methods Man page
slice_code-methods, Man page
slice_code<-,nifti-method Man page
slice_code,nifti-method Man page
slice.code<-,nifti-method Man page
slice.code,nifti-method Man page
slice_duration Man page
slice_duration<- Man page
slice.duration Man page
slice.duration<- Man page
slice_duration-methods Man page
slice_duration-methods, Man page
slice_duration<-,nifti-method Man page
slice_duration,nifti-method Man page
slice.duration<-,nifti-method Man page
slice.duration,nifti-method Man page
slice_end Man page
slice_end<- Man page
slice.end Man page
slice.end<- Man page
slice_end-methods Man page
slice_end-methods, Man page
slice_end<-,nifti-method Man page
slice_end,nifti-method Man page
slice.end<-,nifti-method Man page
slice.end,nifti-method Man page
slice_start Man page
slice_start<- Man page
slice.start Man page
slice.start<- Man page
slice_start-methods Man page
slice_start-methods, Man page
slice_start<-,nifti-method Man page
slice_start,nifti-method Man page
slice.start<-,nifti-method Man page
slice.start,nifti-method Man page
smax Man page
smax<- Man page
smax<-,anlz-method Man page
smax,anlz-method Man page
smax-methods Man page
smax-methods, Man page
smin Man page
smin<- Man page
smin<-,anlz-method Man page
smin,anlz-method Man page
smin-methods Man page
smin-methods, Man page
space.time2xyzt Man page
srow_x Man page
srow_x<- Man page
srow.x Man page
srow.x<- Man page
srow_x-methods Man page
srow_x-methods, Man page
srow_x<-,nifti-method Man page
srow_x,nifti-method Man page
srow.x<-,nifti-method Man page
srow.x,nifti-method Man page
srow_y Man page
srow_y<- Man page
srow.y Man page
srow.y<- Man page
srow_y-methods Man page
srow_y-methods, Man page
srow_y<-,nifti-method Man page
srow_y,nifti-method Man page
srow.y<-,nifti-method Man page
srow.y,nifti-method Man page
srow_z Man page
srow_z<- Man page
srow.z Man page
srow.z<- Man page
srow_z-methods Man page
srow_z-methods, Man page
srow_z<-,nifti-method Man page
srow_z,nifti-method Man page
srow.z<-,nifti-method Man page
srow.z,nifti-method Man page
start_field Man page
start_field<- Man page
start_field<-,anlz-method Man page
start_field,anlz-method Man page
start_field-methods Man page
start_field-methods, Man page
tim.colors Man page
toffset Man page
toffset<- Man page
toffset-methods Man page
toffset-methods, Man page
toffset<-,nifti-method Man page
toffset,nifti-method Man page
translateCoordinate Man page
unused1 Man page
unused1<- Man page
unused1<-,anlz-method Man page
unused1,anlz-method Man page
unused1-methods Man page
unused1-methods, Man page
verified Man page
verified<- Man page
verified<-,anlz-method Man page
verified,anlz-method Man page
verified-methods Man page
verified-methods, Man page
views Man page
views<- Man page
views<-,anlz-method Man page
views,anlz-method Man page
views-methods Man page
views-methods, Man page
vols_added Man page
vols_added<- Man page
vols.added Man page
vols.added<- Man page
vols_added<-,anlz-method Man page
vols_added,anlz-method Man page
vols.added<-,anlz-method Man page
vols.added,anlz-method Man page
vols_added-methods Man page
vols_added-methods, Man page
vols.added,nifti-method Man page
voxdim Man page
vox_offset Man page
vox_offset<- Man page
vox.offset Man page
vox.offset<- Man page
vox_offset<-,anlz-method Man page
vox_offset,anlz-method Man page
vox.offset<-,anlz-method Man page
vox.offset,anlz-method Man page
vox_offset-methods Man page
vox_offset-methods, Man page
vox_offset<-,nifti-method Man page
vox_offset,nifti-method Man page
vox.offset<-,nifti-method Man page
vox.offset,nifti-method Man page
voxres Man page
vox_units Man page
vox_units<- Man page
vox.units Man page
vox.units<- Man page
vox_units<-,anlz-method Man page
vox_units,anlz-method Man page
vox.units<-,anlz-method Man page
vox.units,anlz-method Man page
vox_units-methods Man page
vox_units-methods, Man page
vox.units,nifti-method Man page
writeAFNI Man page
writeAFNI,afni-method Man page
writeAFNI,ANY-method Man page
writeAFNI-methods Man page
writeANALYZE Man page
writeANALYZE,anlz-method Man page
writeANALYZE-methods Man page
writeNIfTI Man page
writeNIfTI,anlz-method Man page
writeNIfTI,array-method Man page
writeNIfTI-methods Man page
writeNIfTI,nifti-method Man page
xyzt2space Man page
xyzt2time Man page
xyzt_units Man page
xyzt_units<- Man page
xyzt.units Man page
xyzt.units<- Man page
xyzt_units-methods Man page
xyzt_units-methods, Man page
xyzt_units<-,nifti-method Man page
xyzt_units,nifti-method Man page
xyzt.units<-,nifti-method Man page
xyzt.units,nifti-method Man page
zero_trans Man page

Files

oro.nifti
oro.nifti/inst
oro.nifti/inst/afni
oro.nifti/inst/afni/TT_N27_EZ_LR+tlrc.BRIK.gz
oro.nifti/inst/afni/TT_N27_EZ_LR+tlrc.HEAD
oro.nifti/inst/afni/ARzs_CW_avvr.DEL+orig.HEAD
oro.nifti/inst/afni/ARzs_CW_avvr.DEL+orig.BRIK
oro.nifti/inst/CITATION
oro.nifti/inst/anlz
oro.nifti/inst/anlz/avg152T1.hdr.gz
oro.nifti/inst/anlz/avg152T1.img.gz
oro.nifti/inst/nifti
oro.nifti/inst/nifti/filtered_func_data.nii.gz
oro.nifti/inst/nifti/mniLR.nii.gz
oro.nifti/inst/nifti/mniRL.nii.gz
oro.nifti/inst/nifti/zstat1.nii.gz
oro.nifti/inst/doc
oro.nifti/inst/doc/nifti.Rnw
oro.nifti/inst/doc/nifti.R
oro.nifti/inst/doc/nifti.pdf
oro.nifti/inst/doc/ANALYZE75.pdf
oro.nifti/tests
oro.nifti/tests/Examples
oro.nifti/tests/Examples/oro.nifti-Ex.Rout.save
oro.nifti/tests/testthat.R
oro.nifti/tests/testthat
oro.nifti/tests/testthat/test_xyzt_units.R
oro.nifti/tests/testthat/test_sizeof_hdr.R
oro.nifti/NAMESPACE
oro.nifti/demo
oro.nifti/demo/avg152T1RL.R
oro.nifti/demo/avg152T1LR.R
oro.nifti/demo/avg152T1.R
oro.nifti/demo/00Index
oro.nifti/demo/filtered_func_data.R
oro.nifti/R
oro.nifti/R/intent_code.R oro.nifti/R/coerce.R oro.nifti/R/srow_z.R oro.nifti/R/session_error.R oro.nifti/R/extender.R oro.nifti/R/scl_inter.R oro.nifti/R/omin.R oro.nifti/R/generated.R oro.nifti/R/smax.R oro.nifti/R/qoffset_z.R oro.nifti/R/exp_time.R oro.nifti/R/regular.R oro.nifti/R/extents.R oro.nifti/R/voxres.R oro.nifti/R/plot.R oro.nifti/R/srow_y.R oro.nifti/R/vols_added.R oro.nifti/R/views.R oro.nifti/R/drop_img_dim.R oro.nifti/R/nifti_assign.R oro.nifti/R/orient.R oro.nifti/R/convert_nifti.R oro.nifti/R/miscellaneous.R oro.nifti/R/sizeof_hdr.R oro.nifti/R/glmax.R oro.nifti/R/bitpix.R oro.nifti/R/funused3.R oro.nifti/R/afniS4.R oro.nifti/R/aux_file.R oro.nifti/R/magic.R oro.nifti/R/datatype.R oro.nifti/R/quaternion.R oro.nifti/R/wrappers.R oro.nifti/R/glmin.R oro.nifti/R/qoffset_y.R oro.nifti/R/quatern_b.R oro.nifti/R/unused1.R oro.nifti/R/oro2nii.R oro.nifti/R/convert_anlz.R oro.nifti/R/analyzeS4.R oro.nifti/R/quatern_d.R oro.nifti/R/origin.R oro.nifti/R/hotmetal.R oro.nifti/R/intent_p3.R oro.nifti/R/cal_min.R oro.nifti/R/remove.R oro.nifti/R/vox_units.R oro.nifti/R/slice_duration.R oro.nifti/R/intent_p1.R oro.nifti/R/patient_id.R oro.nifti/R/dim_.R oro.nifti/R/sform_code.R oro.nifti/R/zero_trans.R oro.nifti/R/cal_img.R oro.nifti/R/niftiS4.R oro.nifti/R/xyzt_units.R oro.nifti/R/tim_colors.R oro.nifti/R/slice_end.R oro.nifti/R/dim_info.R oro.nifti/R/img_data.R oro.nifti/R/is.R oro.nifti/R/smin.R oro.nifti/R/db_name.R oro.nifti/R/anlz_Operators.R oro.nifti/R/slice_start.R oro.nifti/R/intent_name.R oro.nifti/R/qoffset_x.R oro.nifti/R/data_type.R oro.nifti/R/blend.R oro.nifti/R/omax.R oro.nifti/R/Operators.R oro.nifti/R/dim_un0.R oro.nifti/R/funused2.R oro.nifti/R/quatern_c.R oro.nifti/R/hist_un0.R oro.nifti/R/hkey_un0.R oro.nifti/R/scl_slope.R oro.nifti/R/vox_offset.R oro.nifti/R/field_skip.R oro.nifti/R/slice_code.R oro.nifti/R/auditTrail.R oro.nifti/R/srow_x.R oro.nifti/R/start_field.R oro.nifti/R/transform.R oro.nifti/R/voxdim.R oro.nifti/R/scannum.R oro.nifti/R/funused1.R oro.nifti/R/toffset.R oro.nifti/R/pixdim.R oro.nifti/R/compressed.R oro.nifti/R/verified.R oro.nifti/R/readS4.R oro.nifti/R/onefile.R oro.nifti/R/nii2oro.R oro.nifti/R/exp_date.R oro.nifti/R/cal_units.R oro.nifti/R/intent_p2.R oro.nifti/R/zzz.R oro.nifti/R/writeS4.R oro.nifti/R/cal_max.R oro.nifti/R/qform_code.R oro.nifti/R/descrip.R
oro.nifti/vignettes
oro.nifti/vignettes/nifti.Rnw
oro.nifti/vignettes/nifti.bib
oro.nifti/MD5
oro.nifti/build
oro.nifti/build/vignette.rds
oro.nifti/DESCRIPTION
oro.nifti/man
oro.nifti/man/drop_img_dim.Rd oro.nifti/man/tim_colors.Rd oro.nifti/man/compressed-methods.Rd oro.nifti/man/omin-methods.Rd oro.nifti/man/qoffset_y-methods.Rd oro.nifti/man/remove.Rd oro.nifti/man/dim_info-methods.Rd oro.nifti/man/vox_offset-methods.Rd oro.nifti/man/cal_units-methods.Rd oro.nifti/man/hotmetal.Rd oro.nifti/man/funused1-methods.Rd oro.nifti/man/views-methods.Rd oro.nifti/man/quatern_c-methods.Rd oro.nifti/man/qoffset_x-methods.Rd oro.nifti/man/intent_code-methods.Rd oro.nifti/man/generated-methods.Rd oro.nifti/man/unused1-methods.Rd oro.nifti/man/cal_min-methods.Rd oro.nifti/man/performPermutation.Rd oro.nifti/man/quatern_d-methods.Rd oro.nifti/man/convert_nifti.Rd oro.nifti/man/img_data-methods.Rd oro.nifti/man/aux_file-methods.Rd oro.nifti/man/sform_code-methods.Rd oro.nifti/man/funused3-methods.Rd oro.nifti/man/transformCoordinate.Rd oro.nifti/man/dim_-methods.Rd oro.nifti/man/niftiAuditTrail-class.Rd oro.nifti/man/voxdim.Rd oro.nifti/man/start_field-methods.Rd oro.nifti/man/niftiExtension-class.Rd oro.nifti/man/as.nifti.Rd oro.nifti/man/as.anlz.Rd oro.nifti/man/read_nifti.Rd oro.nifti/man/descrip-methods.Rd oro.nifti/man/convert_anlz.Rd oro.nifti/man/onefile.Rd oro.nifti/man/anlz-class.Rd oro.nifti/man/bitwise.Rd oro.nifti/man/sizeof_hdr-methods.Rd oro.nifti/man/exp_time-methods.Rd oro.nifti/man/field_skip-methods.Rd oro.nifti/man/xyzt_units-methods.Rd oro.nifti/man/write_nifti.Rd oro.nifti/man/vox_units-methods.Rd oro.nifti/man/nifti.Rd oro.nifti/man/datatype-methods.Rd oro.nifti/man/db_name-methods.Rd oro.nifti/man/scl_slope-methods.Rd oro.nifti/man/qform_code-methods.Rd oro.nifti/man/funused2-methods.Rd oro.nifti/man/slice_code-methods.Rd oro.nifti/man/slice_end-methods.Rd oro.nifti/man/extender-methods.Rd oro.nifti/man/vols_added-methods.Rd oro.nifti/man/regular-methods.Rd oro.nifti/man/image-methods.Rd oro.nifti/man/intent_name-methods.Rd oro.nifti/man/niftiops.Rd oro.nifti/man/read_anlz.Rd oro.nifti/man/dim_un0-methods.Rd oro.nifti/man/audit_trail-methods.Rd oro.nifti/man/srow_z-methods.Rd oro.nifti/man/orthographic-methods.Rd oro.nifti/man/srow_y-methods.Rd oro.nifti/man/exp_date-methods.Rd oro.nifti/man/orientation-methods.Rd oro.nifti/man/session_error-methods.Rd oro.nifti/man/hkey_un0-methods.Rd oro.nifti/man/is_afni.Rd oro.nifti/man/orient-methods.Rd oro.nifti/man/glmax-methods.Rd oro.nifti/man/omax-methods.Rd oro.nifti/man/hist_un0-methods.Rd oro.nifti/man/write_anlz.Rd oro.nifti/man/smax-methods.Rd oro.nifti/man/data_type-methods.Rd oro.nifti/man/quatern_b-methods.Rd oro.nifti/man/miscellaneous.Rd oro.nifti/man/oro2nii.Rd oro.nifti/man/voxres.Rd oro.nifti/man/read_afni.Rd oro.nifti/man/niftiExtensionSection-class.Rd oro.nifti/man/magic-methods.Rd oro.nifti/man/coerce-methods.Rd oro.nifti/man/glmin-methods.Rd oro.nifti/man/integerTranslation.Rd oro.nifti/man/cal_max-methods.Rd oro.nifti/man/patient_id-methods.Rd oro.nifti/man/nifti-class.Rd oro.nifti/man/qoffset_z-methods.Rd oro.nifti/man/srow_x-methods.Rd oro.nifti/man/anlz-nifti-ops.Rd oro.nifti/man/zero_trans.Rd oro.nifti/man/is_nifti.Rd oro.nifti/man/anlz.Rd oro.nifti/man/convert_afni.Rd oro.nifti/man/nii2oro.Rd oro.nifti/man/is_anlz.Rd oro.nifti/man/quaternion2rotation.Rd oro.nifti/man/overlay-methods.Rd oro.nifti/man/slice_duration-methods.Rd oro.nifti/man/bitpix-methods.Rd oro.nifti/man/intent_p2-methods.Rd oro.nifti/man/scl_inter-methods.Rd oro.nifti/man/audit_trail.Rd oro.nifti/man/blend-methods.Rd oro.nifti/man/toffset-methods.Rd oro.nifti/man/extents-methods.Rd oro.nifti/man/pixdim-methods.Rd oro.nifti/man/intent_p3-methods.Rd oro.nifti/man/write_afni-methods.Rd oro.nifti/man/cal_img.Rd oro.nifti/man/reorient.Rd oro.nifti/man/nifti_assign-methods.Rd oro.nifti/man/verified-methods.Rd oro.nifti/man/smin-methods.Rd oro.nifti/man/intent_p1-methods.Rd oro.nifti/man/afni-class.Rd oro.nifti/man/scannum-methods.Rd oro.nifti/man/slice_start-methods.Rd oro.nifti/man/origin-methods.Rd
oro.nifti/LICENSE

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