afni-class: Class "afni"

In oro.nifti: Rigorous - 'NIfTI' + 'ANALYZE' + 'AFNI' : Input / Output

Class "afni"

Description

The AFNI class for medical imaging data.

Usage

## S4 method for signature 'afni'
show(object)

Arguments

object

An object of class afni.

Objects from the Class

Objects can be created by calls of the form new("afni", data, dim, dimnames, ...).

Slots

.Data:

Object of class "array" contains the imaging data

DATASET_RANK:

Object of class "integer"

DATASET_DIMENSIONS:

Object of class "integer"

TYPESTRING:

Object of class "character"

SCENE_DATA:

Object of class "integer"

ORIENT_SPECIFIC:

Object of class "integer"

ORIGIN:

Object of class "numeric"

DELTA:

Object of class "numeric"

TAXIS_NUMS:

Object of class "integer"

TAXIS_FLOATS:

Object of class "numeric"

TAXIS_OFFSETS:

Object of class "numeric"

IDCODE_STRING:

Object of class "character"

IDCODE_DATE:

Object of class "character"

BYTEORDER_STRING:

Object of class "character"

BRICK_STATS:

Object of class "numeric"

BRICK_TYPES:

Object of class "integer"

BRICK_FLOAT_FACS:

Object of class "numeric"

BRICK_LABS:

Object of class "character"

BRICK_STATAUX:

Object of class "numeric"

STAT_AUX:

Object of class "numeric"

HISTORY_NOTE:

Object of class "character"

NOTES_COUNT:

Object of class "integer"

NOTE_NUMBER:

Object of class "character"

TAGALIGN_MATVEC:

Object of class "numeric"

VOLREG_MATVEC:

Object of class "array"

VOLREG_ROTCOM:

Object of class "character"

VOLREG_CENTER_OLD:

Object of class "numeric"

VOLREG_CENTER_BASE:

Object of class "numeric"

VOLREG_ROTPARENT_IDCODE:

Object of class "character"

VOLREG_ROTPARENT_NAME:

Object of class "character"

VOLREG_GRIDPARENT_IDCODE:

Object of class "character"

VOLREG_GRIDPARENT_NAME:

Object of class "character"

VOLREG_INPUT_IDCODE:

Object of class "character"

VOLREG_INPUT_NAME:

Object of class "character"

VOLREG_BASE_IDCODE:

Object of class "character"

VOLREG_BASE_NAME:

Object of class "character"

VOLREG_ROTCOM_NUM:

Object of class "integer"

IDCODE_ANAT_PARENT:

Object of class "character"

TO3D_ZPAD:

Object of class "integer"

IDCODE_WARP_PARENT:

Object of class "character"

WARP_TYPE:

Object of class "integer"

WARP_DATA:

Object of class "numeric"

MARKS_XYZ:

Object of class "numeric"

MARKS_LAB:

Object of class "character"

MARKS_HELP:

Object of class "character"

MARKS_FLAGS:

Object of class "integer"

TAGSET_NUM:

Object of class "integer"

TAGSET_FLOATS:

Object of class "numeric"

TAGSET_LABELS:

Object of class "character"

LABEL_1:

Object of class "character"

LABEL_2:

Object of class "character"

DATASET_NAME:

Object of class "character"

DATASET_KEYWORDS:

Object of class "character"

BRICK_KEYWORDS:

Object of class "character"

Extends

Class "array", from data part.
Class "matrix", by class “array”, distance 2, with explicit test and coerce.
Class "structure", by class “array”, distance 2.
Class "vector", by class “array”, distance 3, with explicit coerce.
Class "vector", by class “array”, distance 5, with explicit test and coerce.

Author(s)

Karsten Tabelow [e-mail]

References

AFNI
http://afni.nimh.nih.gov/pub/dist/src/README.attributes

See Also

nifti, anlz

Examples

showClass("afni")

oro.nifti documentation built on Aug. 10, 2022, 5:09 p.m.