outbreaker: Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data

Bayesian reconstruction of disease outbreaks using epidemiological and genetic information.

AuthorThibaut Jombart <thibautjombart@gmail.com>, Anne Cori, Joel Hellewell
Date of publication2015-12-07 23:13:36
MaintainerThibaut Jombart <thibautjombart@gmail.com>
LicenseGPL (>= 2)
Version1.1-7
http://sites.google.com/site/therepiproject/r-pac/outbreaker

View on CRAN

Files

outbreaker
outbreaker/inst
outbreaker/inst/CITATION
outbreaker/configure.ac
outbreaker/src
outbreaker/src/distances.h
outbreaker/src/common.h
outbreaker/src/distances.c
outbreaker/src/mcmc.h
outbreaker/src/moves.c
outbreaker/src/structures.h
outbreaker/src/outbreaker.c
outbreaker/src/matvec.c
outbreaker/src/structures.c
outbreaker/src/prior.c
outbreaker/src/prior.h
outbreaker/src/moves.h
outbreaker/src/Makevars.in
outbreaker/src/init.h
outbreaker/src/likelihood.c
outbreaker/src/genclasses.h
outbreaker/src/matvec.h
outbreaker/src/Makevars.win
outbreaker/src/init.c
outbreaker/src/likelihood.h
outbreaker/src/genclasses.c
outbreaker/src/mcmc.c
outbreaker/NAMESPACE
outbreaker/data
outbreaker/data/fakeOutbreak.RData
outbreaker/R
outbreaker/R/selectChains.R outbreaker/R/mutationRates.R outbreaker/R/simOutbreak.R outbreaker/R/plot.R outbreaker/R/reproRate.R outbreaker/R/data.R outbreaker/R/tTree.R outbreaker/R/package.R outbreaker/R/interface.R outbreaker/R/zzz.R
outbreaker/README.md
outbreaker/MD5
outbreaker/DESCRIPTION
outbreaker/configure
outbreaker/ChangeLog
outbreaker/man
outbreaker/man/simulated-outbreak-dataset.Rd outbreaker/man/selectChains.Rd outbreaker/man/outbreaker.package.Rd outbreaker/man/outbreaker.Rd outbreaker/man/tTree.Rd outbreaker/man/simOutbreak.Rd outbreaker/man/plot.Rd outbreaker/man/repro.Rd outbreaker/man/get.mu.Rd

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