outbreaker: Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data

Bayesian reconstruction of disease outbreaks using epidemiological and genetic information.

Install the latest version of this package by entering the following in R:
install.packages("outbreaker")
AuthorThibaut Jombart <thibautjombart@gmail.com>, Anne Cori, Joel Hellewell
Date of publication2015-12-07 23:13:36
MaintainerThibaut Jombart <thibautjombart@gmail.com>
LicenseGPL (>= 2)
Version1.1-7
http://sites.google.com/site/therepiproject/r-pac/outbreaker

View on CRAN

Files

inst
inst/CITATION
configure.ac
src
src/distances.h
src/common.h
src/distances.c
src/mcmc.h
src/moves.c
src/structures.h
src/outbreaker.c
src/matvec.c
src/structures.c
src/prior.c
src/prior.h
src/moves.h
src/Makevars.in
src/init.h
src/likelihood.c
src/genclasses.h
src/matvec.h
src/Makevars.win
src/init.c
src/likelihood.h
src/genclasses.c
src/mcmc.c
NAMESPACE
data
data/fakeOutbreak.RData
R
R/selectChains.R R/mutationRates.R R/simOutbreak.R R/plot.R R/reproRate.R R/data.R R/tTree.R R/package.R R/interface.R R/zzz.R
README.md
MD5
DESCRIPTION
configure
ChangeLog
man
man/simulated-outbreak-dataset.Rd man/selectChains.Rd man/outbreaker.package.Rd man/outbreaker.Rd man/tTree.Rd man/simOutbreak.Rd man/plot.Rd man/repro.Rd man/get.mu.Rd

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