Files in outbreaker

Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data

cleanup

MD5

configure.ac

DESCRIPTION

README.md

NAMESPACE

configure

ChangeLog

inst/CITATION

R/data.R R/zzz.R R/package.R R/interface.R R/tTree.R R/plot.R R/simOutbreak.R R/mutationRates.R R/reproRate.R R/selectChains.R

src/structures.c

src/prior.c

src/outbreaker.c

src/genclasses.h

src/moves.h

src/prior.h

src/Makevars.win

src/init.c

src/moves.c

src/outbreaker_init.c

src/init.h

src/likelihood.h

src/structures.h

src/likelihood.c

src/distances.h

src/distances.c

src/mcmc.h

src/Makevars.in

src/matvec.c

src/mcmc.c

src/genclasses.c

src/common.h

src/matvec.h

man/repro.Rd man/simOutbreak.Rd man/simulated-outbreak-dataset.Rd man/outbreaker.package.Rd man/tTree.Rd man/get.mu.Rd man/outbreaker.Rd man/selectChains.Rd man/plot.Rd

data/fakeOutbreak.RData

outbreaker documentation built on May 1, 2019, 10:23 p.m.