s_enteritidis_pt59: Salmonella Enteritidis PT59 outbreak
In outbreaks: A Collection of Disease Outbreak Data

Description Usage Format Details Author(s) Source

This dataset covers a food-borne outbreak of Salmonella Enteritidis PT59 investigated by Public Health England. The data includes a distribution network, and genetic clusters of bacteria isolated in contaminated patients. The data is anonymised: identifiers of the food distribution network have been hashed. The object s_enteritidis_pt59 is a list containing:

1	s_enteritidis_pt59

An object of class list of length 2.

$graph: a data.frame containing with two columns from and to specifying (directed) edges of the food distribution network, alongside reported cases (terminal branches, or 'tips').
$cluster: a factor indicating the genetic cluster of named tips.

Thomas Inns Thomas.Inns@phe.gov.uk, Philip Ashton, Tim Dallman, Roberto Vivancos. Hashing and port to R by Thibaut Jombart.

Multi-agency Salmonella Enteritidis PT59 Outbreak Control Team, chaired by Public Health England

outbreaks documentation built on Oct. 23, 2020, 6:43 p.m.