overlap: Estimates of Coefficient of Overlapping for Animal Activity Patterns
Version 0.2.7

Provides functions to fit kernel density functions to data on temporal activity patterns of animals; estimate coefficients of overlapping of densities for two species; and calculate bootstrap estimates of confidence intervals.

AuthorMike Meredith and Martin Ridout
Date of publication2017-03-01 08:36:33
MaintainerMike Meredith <mmeredith@wcs.org>
LicenseGPL (>= 3)
Version0.2.7
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("overlap")

Getting started

Package overview

Popular man pages

bootCI: Confidence interval calculation from bootstrap samples.
bootEst: Functions to generate bootstrap estimates of overlap
densityFit: Fits von Mises kernel density to time-of-day data.
densityPlot: Plot fitted kernel densities
example_data: Times of 'capture' of large mammals
overlapEst: Estimates of coefficient of overlapping
overlapTrue: Calculates the true coefficient of overlapping between two...
See all...

All man pages Function index File listing

Man pages

bootCI: Confidence interval calculation from bootstrap samples.
bootEst: Functions to generate bootstrap estimates of overlap
densityFit: Fits von Mises kernel density to time-of-day data.
densityPlot: Plot fitted kernel densities
example_data: Times of 'capture' of large mammals
getBandWidth: Optimal bandwidth calculation
overlapEst: Estimates of coefficient of overlapping
overlap-package: Functions to estimate overlap of temporal activity patterns...
overlapPlot: Plot overlapping kernel densities
overlapTrue: Calculates the true coefficient of overlapping between two...
simulatedData: Simulated data for diurnal activity patterns

Functions

Afun Source code
Example data Man page
TrigMomRad Source code
bootCI Man page Source code
bootCIlogit Man page Source code
bootEst Man page Source code
densityFit Man page Source code
densityPlot Man page Source code
getBandWidth Man page Source code
kerinci Man page
overlap Man page
overlap-package Man page
overlapEst Man page Source code
overlapPlot Man page Source code
overlapTrue Man page Source code
pigObs Man page
pigTrue Man page
plotTimeAxis Source code
quantileInter Source code
rejectSampleRad Source code
resample Man page Source code
simulatedData Man page
tigerObs Man page
tigerTrue Man page

Files

inst
inst/tests
inst/tests/testthat
inst/tests/testthat/test-all.R
inst/doc
inst/doc/overlap.pdf
inst/doc/overlap.Rnw
inst/doc/overlap.R
src
src/densRad.c
src/init.c
NAMESPACE
NEWS
data
data/simulatedData.rda
data/kerinci.rda
R
R/overlapPlot.R
R/overlapEst.R
R/bootCI.R
R/getBandWidth.R
R/Resample.R
R/densityPlot.R
R/bootEst.R
R/overlapTrue.R
R/miscPlottingUtils.R
R/densityFit.R
vignettes
vignettes/overlap.Rnw
vignettes/overlap.bib
MD5
README
build
build/vignette.rds
DESCRIPTION
man
man/figures
man/figures/pig.jpg
man/figures/tiger.jpg
man/figures/Dhat1.jpg
man/figures/Dhat4.jpg
man/figures/tigNpig.jpg
man/figures/Dhat5.jpg
man/figures/Delta.jpg
man/figures/overlap.jpg
man/bootEst.Rd
man/overlapEst.Rd
man/simulatedData.Rd
man/overlapPlot.Rd
man/densityFit.Rd
man/overlapTrue.Rd
man/getBandWidth.Rd
man/densityPlot.Rd
man/example_data.Rd
man/overlap-package.Rd
man/bootCI.Rd
overlap documentation built on May 19, 2017, 5:02 p.m.

Questions? Problems? Suggestions? Tweet to @rdrrHQ or email at ian@mutexlabs.com.

Please suggest features or report bugs in the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.