overlap: Estimates of Coefficient of Overlapping for Animal Activity Patterns

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Provides functions to fit kernel density functions to data on temporal activity patterns of animals; estimate coefficients of overlapping of densities for two species; and calculate bootstrap estimates of confidence intervals.

Author
Mike Meredith and Martin Ridout
Date of publication
2016-02-14 17:30:24
Maintainer
Mike Meredith <mmeredith@wcs.org>
License
GPL (>= 3)
Version
0.2.6

View on CRAN

Man pages

bootCI
Confidence interval calculation from bootstrap samples.
bootEst
Functions to generate bootstrap estimates of overlap
densityFit
Fits von Mises kernel density to time-of-day data.
densityPlot
Plot fitted kernel densities
example_data
Times of 'capture' of large mammals
getBandWidth
Optimal bandwidth calculation
overlapEst
Estimates of coefficient of overlapping
overlap-package
Functions to estimate overlap of temporal activity patterns...
overlapPlot
Plot overlapping kernel densities
overlapTrue
Calculates the true coefficient of overlapping between two...
simulatedData
Simulated data for diurnal activity patterns

Files in this package

overlap
overlap/inst
overlap/inst/tests
overlap/inst/tests/testthat
overlap/inst/tests/testthat/test-all.R
overlap/inst/doc
overlap/inst/doc/overlap.pdf
overlap/inst/doc/overlap.Rnw
overlap/inst/doc/overlap.R
overlap/src
overlap/src/densRad.c
overlap/NAMESPACE
overlap/NEWS
overlap/data
overlap/data/simulatedData.rda
overlap/data/kerinci.rda
overlap/R
overlap/R/overlapPlot.R
overlap/R/overlapEst.R
overlap/R/bootCI.R
overlap/R/getBandWidth.R
overlap/R/Resample.R
overlap/R/densityPlot.R
overlap/R/bootEst.R
overlap/R/overlapTrue.R
overlap/R/miscPlottingUtils.R
overlap/R/densityFit.R
overlap/vignettes
overlap/vignettes/overlap.Rnw
overlap/vignettes/overlap.bib
overlap/MD5
overlap/README
overlap/build
overlap/build/vignette.rds
overlap/DESCRIPTION
overlap/man
overlap/man/figures
overlap/man/figures/pig.jpg
overlap/man/figures/tiger.jpg
overlap/man/figures/Dhat1.jpg
overlap/man/figures/Dhat4.jpg
overlap/man/figures/tigNpig.jpg
overlap/man/figures/Dhat5.jpg
overlap/man/figures/Delta.jpg
overlap/man/figures/overlap.jpg
overlap/man/bootEst.Rd
overlap/man/overlapEst.Rd
overlap/man/simulatedData.Rd
overlap/man/overlapPlot.Rd
overlap/man/densityFit.Rd
overlap/man/overlapTrue.Rd
overlap/man/getBandWidth.Rd
overlap/man/densityPlot.Rd
overlap/man/example_data.Rd
overlap/man/overlap-package.Rd
overlap/man/bootCI.Rd