NEWS.md

In pQTLdata: A Collection of Proteome Panels and Meta-Data

pQTLdata 0.5

(2025/3/5)

• Add README.Rmd so as to extract DESCRIPTION/Description to README.md.
• Automate knitr::knit("README.Rmd");devtools::document() and pkgdown::build_site().
• Revise DESCRIPTION/pQTLdata.R(md)/inst/scripts (suggested by Beni Altmann).
• Revise _pkgdown.yml.

pQTLdata 0.4

(2025/3/2)

• CRAN submission
• Extend Description and add seer1980 to data/datalist.

pQTLdata 0.3

(2025/2/20)

• Add Olink-Target-96-Assay-List.xlsx (15 panels).
• Drop olink-explore-ht-assay-list-2023-07-12.xlsx (5,343) for olink-explore-ht-assay-list.xlsx (5,416=5,400+).
• Add single quotes to software names in Title/Description inside DESCRIPTION (suggested by Uwe Ligges).
• Minor changes including splitting utils.R and vignette.

pQTLdata 0.2

(2025/2/19)

• Remove biomaRt, hg19, hg19Tables, st[4|6|18] except their R scripts and revise vignette.
• Add Ensembl gene ID to caprion & URL to DESCRIPTION but simplify inst/scripts/docs.sh.
• Add Information on Thermo Fisher Scientific - LSMS / NCI Proteomic Data Commons.
• Add/remove information for Olink® Target 96 Inflammation Panels.
• Add inst/README.md, SomaLogic/ given SomaScan.db is developed.

pQTLdata 0.1

(2024/06/10)

• Add
  • Olink/, EndNote/, scripts/ to inst/.
  • caprion.rda and caprion.R.
  • seer1980.rda and seer1980.R.
  • biomaRt.rda, hg19.rda, hg19Tables.rda, inf1.rda, scallop_inf1, st4.rda, st6.rda, st18.rda, but drop hgTables. Q8NF90 and Q8WWJ7 in inf1.rda were not listed at the UCSC, and replaced with P12034 and P30203 as on UniProt.
  • SomaScan lookup (panels, box, ST4, ST6).
• Remove \uFEFF characters with iconv.
• Adopt pkgdown, bookdown-driven vignette, a 1/10 version increment algorithm.
• Imports knitr, Rdpack.
• Suggests dplyr, grid, VennDiagram.
• First release.

pQTLdata documentation built on April 12, 2025, 1:34 a.m.