tests/testthat/test-platt_etr_II.R

In pam: Fast and Efficient Processing of PAM Data

test_that("test-platt_etr_II generate regression 20240925.csv", {
  test_data_file <- file.path(getwd(), "data", "20240925.csv")
  data <- read_dual_pam_data(test_data_file)
  model_result <- platt_generate_regression_ETR_II(data)

  os_name <- Sys.info()[["sysname"]]

  if (os_name == "Linux") {
    os_release <- readLines("/etc/os-release")
    distro_line <- grep("^ID=", os_release, value = TRUE)
    distro <- sub("^ID=", "", distro_line)

    if (distro == "debian" || distro == "ubuntu") {
      expect_equal(model_result[["sdiff"]], 12.0348133)
      expect_equal(model_result[["alpha"]], 0.178182825)
      expect_equal(model_result[["beta"]], 0.035606479)
      expect_equal(model_result[["ps"]], 76.53219)
      expect_equal(model_result[["pm"]], 44.5824637)
      expect_equal(model_result[["ik"]], 250.2062903)
      expect_equal(model_result[["is"]], 429.514971)
      expect_equal(model_result[["ib"]], 2149.38944)
      expect_equal(model_result[["im"]], 769.88984)
    } else {
      skip(paste("Skipping test on unsupported Linux distribution:", distro))
    }
  } else if (os_name == "Windows") {
    expect_equal(model_result[["sdiff"]], 12.0348133)
    expect_equal(model_result[["alpha"]], 0.178182825)
    expect_equal(model_result[["beta"]], 0.035606479)
    expect_equal(model_result[["ps"]], 76.53219)
    expect_equal(model_result[["pm"]], 44.5824637)
    expect_equal(model_result[["ik"]], 250.2062903)
    expect_equal(model_result[["is"]], 429.514971)
    expect_equal(model_result[["ib"]], 2149.38944)
    expect_equal(model_result[["im"]], 769.88984)
  } else {
    skip(paste("Unsupported operating system:", os_name))
  }
})

test_that("test-platt_etr_II control plot 20240925.csv", {
  test_data_file <- file.path(getwd(), "data", "20240925.csv")
  data <- read_dual_pam_data(test_data_file)
  model_result <- platt_generate_regression_ETR_II(data)

  expect_no_warning(
    print(
      plot_control(
        data,
        model_result,
        "platt ETR II 20240925.csv",
        color_platt
      )
    )
  )
})

test_that("test-platt_etr_II generate regression modified 20240925.csv", {
  test_data_file <- file.path(getwd(), "data", "20240925.csv")
  data <- read_dual_pam_data(test_data_file)
  model_result <- platt_generate_regression_ETR_II(data)
  model_result <- platt_modified(model_result)

  os_name <- Sys.info()[["sysname"]]

  if (os_name == "Linux") {
    os_release <- readLines("/etc/os-release")
    distro_line <- grep("^ID=", os_release, value = TRUE)
    distro <- sub("^ID=", "", distro_line)

    if (distro == "debian" || distro == "ubuntu") {
      expect_equal(model_result[["sdiff"]], 12.0348133)
      expect_equal(model_result[["a"]], 76.53219)
      expect_equal(model_result[["b"]], 0.178182825)
      expect_equal(model_result[["c"]], 0.035606479)
      expect_equal(model_result[["d"]], NA_real_)
      expect_equal(model_result[["alpha"]], 0.178182825)
      expect_equal(model_result[["beta"]], 0.035606479)
      expect_equal(model_result[["etrmax_with_photoinhibition"]], 44.5824637)
      expect_equal(model_result[["etrmax_without_photoinhibition"]], 76.53219)
      expect_equal(model_result[["ik_with_photoinhibition"]], 250.2062903)
      expect_equal(model_result[["ik_without_photoinhibition"]], 429.514971)
      expect_equal(model_result[["im_with_photoinhibition"]], 769.88984)
      expect_equal(model_result[["w"]], NA_real_)
      expect_equal(model_result[["ib"]], 2149.38944)
      expect_equal(model_result[["etrmax_with_without_ratio"]], 1.71664337)
    } else {
      skip(paste("Skipping test on unsupported Linux distribution:", distro))
    }
  } else if (os_name == "Windows") {
    expect_equal(model_result[["sdiff"]], 12.0348133)
    expect_equal(model_result[["a"]], 76.53219)
    expect_equal(model_result[["b"]], 0.178182825)
    expect_equal(model_result[["c"]], 0.035606479)
    expect_equal(model_result[["d"]], NA_real_)
    expect_equal(model_result[["alpha"]], 0.178182825)
    expect_equal(model_result[["beta"]], 0.035606479)
    expect_equal(model_result[["etrmax_with_photoinhibition"]], 44.5824637)
    expect_equal(model_result[["etrmax_without_photoinhibition"]], 76.53219)
    expect_equal(model_result[["ik_with_photoinhibition"]], 250.2062903)
    expect_equal(model_result[["ik_without_photoinhibition"]], 429.514971)
    expect_equal(model_result[["im_with_photoinhibition"]], 769.88984)
    expect_equal(model_result[["w"]], NA_real_)
    expect_equal(model_result[["ib"]], 2149.38944)
    expect_equal(model_result[["etrmax_with_without_ratio"]], 1.71664337)
  } else {
    skip(paste("Unsupported operating system:", os_name))
  }
})



test_that("test-platt_etr_II modified control plot 20240925.csv", {
  test_data_file <- file.path(getwd(), "data", "20240925.csv")
  data <- read_dual_pam_data(test_data_file)
  model_result <- platt_generate_regression_ETR_II(data)
  model_result <- platt_modified(model_result)

  expect_no_warning(
    print(
      plot_control(
        data,
        model_result,
        "platt ETR II modified 20240925.csv",
        color_platt
      )
    )
  )
})