parmigene: Parallel Mutual Information estimation for Gene Network reconstruction.

The package provides a parallel estimation of the mutual information based on entropy estimates from k-nearest neighbors distances and algorithms for the reconstruction of gene regulatory networks.

Install the latest version of this package by entering the following in R:
install.packages("parmigene")
AuthorGabriele Sales <gabriele.sales@unipd.it>, Chiara Romualdi <chiara.romualdi@unipd.it>
Date of publication2012-07-23 19:57:03
MaintainerGabriele Sales <gabriele.sales@unipd.it>
LicenseAGPL-3
Version1.0.2

View on CRAN

Files

MD5
src
src/points.h
src/points.c
src/mi.h
src/mi.c
src/Makevars.win
src/Makevars
src/iqsort.h
src/inference.c
src/grid.h
src/grid.c
src/bridge.c
R
R/zzz.R R/knnmi.R R/inference.R
NAMESPACE
man
man/mrnet.Rd man/knnmi.Rd man/knnmi.cross.Rd man/knnmi.all.Rd man/clr.Rd man/aracne.m.Rd man/aracne.a.Rd
DESCRIPTION
COPYING

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

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