parmigene: Parallel Mutual Information estimation for Gene Network reconstruction.

The package provides a parallel estimation of the mutual information based on entropy estimates from k-nearest neighbors distances and algorithms for the reconstruction of gene regulatory networks.

AuthorGabriele Sales <gabriele.sales@unipd.it>, Chiara Romualdi <chiara.romualdi@unipd.it>
Date of publication2012-07-23 19:57:03
MaintainerGabriele Sales <gabriele.sales@unipd.it>
LicenseAGPL-3
Version1.0.2

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Files in this package

parmigene
parmigene/MD5
parmigene/src
parmigene/src/points.h
parmigene/src/points.c
parmigene/src/mi.h
parmigene/src/mi.c
parmigene/src/Makevars.win
parmigene/src/Makevars
parmigene/src/iqsort.h
parmigene/src/inference.c
parmigene/src/grid.h
parmigene/src/grid.c
parmigene/src/bridge.c
parmigene/R
parmigene/R/zzz.R parmigene/R/knnmi.R parmigene/R/inference.R
parmigene/NAMESPACE
parmigene/man
parmigene/man/mrnet.Rd parmigene/man/knnmi.Rd parmigene/man/knnmi.cross.Rd parmigene/man/knnmi.all.Rd parmigene/man/clr.Rd parmigene/man/aracne.m.Rd parmigene/man/aracne.a.Rd
parmigene/DESCRIPTION
parmigene/COPYING

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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