parmigene: Parallel Mutual Information estimation for Gene Network reconstruction.

The package provides a parallel estimation of the mutual information based on entropy estimates from k-nearest neighbors distances and algorithms for the reconstruction of gene regulatory networks.

Author
Gabriele Sales <gabriele.sales@unipd.it>, Chiara Romualdi <chiara.romualdi@unipd.it>
Date of publication
2012-07-23 19:57:03
Maintainer
Gabriele Sales <gabriele.sales@unipd.it>
License
AGPL-3
Version
1.0.2

View on CRAN

Man pages

aracne.a
Algorithm for the Reconstruction of Accurate Cellular...
aracne.m
Algorithm for the Reconstruction of Accurate Cellular...
clr
Context Likelihood or Relatedness Network
knnmi
Parallel Mutual Information Estimation
knnmi.all
Parallel Mutual Information Estimation Between All Matrix...
knnmi.cross
Parallel Mutual Information Estimation Between the Rows of...
mrnet
Maximum Relevance Minimum Redundancy

Files in this package

parmigene
parmigene/MD5
parmigene/src
parmigene/src/points.h
parmigene/src/points.c
parmigene/src/mi.h
parmigene/src/mi.c
parmigene/src/Makevars.win
parmigene/src/Makevars
parmigene/src/iqsort.h
parmigene/src/inference.c
parmigene/src/grid.h
parmigene/src/grid.c
parmigene/src/bridge.c
parmigene/R
parmigene/R/zzz.R
parmigene/R/knnmi.R
parmigene/R/inference.R
parmigene/NAMESPACE
parmigene/man
parmigene/man/mrnet.Rd
parmigene/man/knnmi.Rd
parmigene/man/knnmi.cross.Rd
parmigene/man/knnmi.all.Rd
parmigene/man/clr.Rd
parmigene/man/aracne.m.Rd
parmigene/man/aracne.a.Rd
parmigene/DESCRIPTION
parmigene/COPYING