A function that implements the ARACNE algorithm for the reconstruction of gene interaction networks (additive model).
matrix of the mutual information.
a positive numeric value used to remove the weakest edge of each triple of nodes.
This algorithm considers each triple of edges independently and removes the weakest one if
MI(i;j) < MI(j;k) - eps
MI(i;j) < MI(i;k) - eps
By default, the function uses all the available cores. You can
set the actual number of threads used to N by exporting the
A square weighted adjacency matrix of the inferred network.
Adam A. Margolin, Ilya Nemenman, Katia Basso, Chris Wiggins, Gustavo Stolovitzky, Riccardo Dalla Favera, and Andrea Califano. Aracne : An algorithm for the reconstruction of gene regulatory networks in a mammalian cellular context. BMC Bioinformatics, 2006.
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