Man pages for parseRPDR
Parse and Manipulate Research Patient Data Registry ('RPDR') Text Queries

all_ids_mi2b2Legacy function to create a vector of all possible IDs for...
convert_diaSearches diagnosis columns for given diseases.
convert_encSearches columns for given diseases defined by ICD codes.
convert_labConverts lab results to normal/abnormal based-on reference...
convert_medAdds boolean columns corresponding to a group of medications...
convert_notesExtracts information from notes free text.
convert_phySearches health history data for given codes
convert_prcSearches procedures columns for given procedures.
convert_rfvSearches columns for given reason for visit defined by ERFV...
create_img_dbCreate a database of DICOM headers.
dcm_dbInternal function to create a database of DICOM headers.
export_notesExports free text notes to individual text files.
find_examFind exam data within a given timeframe using parallel CPU...
find_exam_bmFind exam data within a given timeframe using parallel CPU...
find_exam_ramFind exam data within a given timeframe using parallel CPU...
load_allLoads allergy data information into R.
load_all_dataLoads all RPDR text outputs into R.
load_baseHelper function for loading RPDR data into R.
load_bibLoads BiobankFile data into R.
load_conLoads contact information into R.
load_demLoads demographic information into R for new demographic...
load_dem_oldLoads demographic information into R for demographics tables...
load_diaLoads diagnoses into R.
load_encLoads encounter information into R.
load_labLoads laboratory results into R.
load_lnoLoads LMR note documents into R.
load_mcmLoads match control data into R.
load_medLoads medication order detail into R.
load_micLoads microbiology results into R.
load_mrnLoads MRN data into R.
load_notesLoads note documents into R.
load_phyLoads helath history information into R.
load_prcLoads procedures into R.
load_prvLoads providers information into R.
load_ptdLoads patient data information into R.
load_rdtLoads radiology procedures data into R.
load_rfvLoads reason for visit data into R.
load_trnLoads transfusion results into R.
parse_idsParse IDs from a string of delimited list of values.
pretty_mrnConverts MRN integer to string compatible with RPDR.
pretty_numbersConverts numerical codes to universal format specified by...
pretty_textRemoves spaces, special characters and capitals from string...
remove_columnDelete columns with all NA or all identical data.
parseRPDR documentation built on March 31, 2023, 11:36 p.m.