Man pages for parseRPDR
Parse and Manipulate Research Patient Data Registry ('RPDR') Text Queries

all_ids_mi2b2Creates a vector of all possible IDs for mi2b2 workbench
convert_diaSearches diagnosis columns for given diseases.
convert_encSearches columns for given diseases defined by ICD codes.
convert_labConverts lab results to normal/abnormal based-on reference...
convert_medAdds boolean columns corresponding to a group of medications...
convert_notesExtracts information from notes free text.
convert_rfvSearches columns for given reason for visit defined by ERFV...
data_conExample of processed con.txt output from RPDR using the...
data_con_rawExample of con.txt output from RPDR.
data_demExample of processed dem.txt output from RPDR using the...
data_dem_rawExample of dem.txt output from RPDR.
data_diaExample of processed dia.txt output from RPDR using the...
data_dia_rawExample of dia.txt output from RPDR.
data_encExample of processed enc.txt output from RPDR using the...
data_enc_rawExample of enc.txt output from RPDR.
data_labExample of processed lab.txt output from RPDR using the...
data_lab_rawExample of lab.txt output from RPDR.
data_medExample of processed med.txt output from RPDR using the...
data_med_rawExample of med.txt output from RPDR.
data_mrnExample of processed mrn.txt output from RPDR using the...
data_mrn_rawExample of mrn.txt output from RPDR.
data_radExample of processed rad.txt output from RPDR using the...
data_rad_rawExample of rad.txt output from RPDR.
data_rdtExample of processed rdt.txt output from RPDR using the...
data_rdt_rawExample of rdt.txt output from RPDR.
find_examFind exam data within a given timeframe using parallel CPU...
find_exam_bmFind exam data within a given timeframe using parallel CPU...
find_exam_ramFind exam data within a given timeframe using parallel CPU...
load_allLoads all RPDR text outputs into R.
load_baseHelper function for loading RPDR data into R.
load_conLoads contact information into R.
load_demLoads demographic information into R.
load_diaLoads diagnoses into R.
load_encLoads encounter information into R.
load_labLoads laboratory results into R.
load_medLoads medication order detail into R.
load_mrnLoads MRN data into R.
load_notesLoads note documents into R.
load_rdtLoads radiology procedures data into R.
load_rfvLoads reason for visit data into R.
parse_idsParse IDs from a string of delimited list of values.
pretty_mrnConverts MRN integer to string compatible with RPDR.
pretty_numbersConverts numerical codes to universal format specified by...
pretty_textRemoves spaces, special characters and capitals from string...
progress_barProvides progress bar for foreach loops.
remove_columnDelete columns with all NA or all identical data.
parseRPDR documentation built on May 10, 2021, 9:09 a.m.