pretty_mrn: Converts MRN integer to string compatible with RPDR.

In parseRPDR: Parse and Manipulate Research Patient Data Registry ('RPDR') Text Queries

Converts MRN integer to string compatible with RPDR.

Description

Adds or removes zeros from integers to comply with MRN code standards for given institution and adds institution prefix.

Usage

pretty_mrn(v, prefix = "MGH", sep = ":", id_length = "standard", nThread = 1)

Arguments

v	vector, integer or sting vector with MRNs.
prefix	string or vector, hospital ID from where the MRNs are from. Defaults to MGH. If a vector is provided then it must be the same length as v. This allows to potentially use different prefixes for different IDs using the same vector of values.
sep	string, divider between hospital ID and MRN. Defaults to :.
id_length	string, indicating whether to modify MRN length based-on required values id_length = standard, or to keep lengths as is id_length = asis. If id_length = standard then in case of MGH, BWH, MCL, EMPI and PMRN the length of the MRNs are corrected accordingly by adding zeros, or removing numeral from the beginning. In other cases the lengths are unchanged. Defaults to standard.
nThread	integer, number of threads to use by dopar for parallelization. If it is set to 1, then no parallel backends are created and the function is executed sequentially.

Value

vector, with characters formatted to specified lengths. If length of the ID does not match the required length, then leading zeros are added to the ID. If the ID is longer then the required length, then numerals from the beginning of the ID are cut off until it is the required length.

Examples

## Not run: 
mrns <- sample(1e4:1e7, size = 10) #Simulate MRNs

#MGH format
pretty_mrn(v = mrns, prefix = "MGH")

#BWH format
pretty_mrn(v = mrns, prefix = "BWH")

#Multiple sources using space as a separator
pretty_mrn(v = mrns[1:3], prefix = c("MGH", "BWH", "EMPI"), sep = " ")

#Keeping the length of the IDs despite not adhering to the requirements
pretty_mrn(v = mrns, prefix = "EMPI", id_length = "asis")

## End(Not run)

parseRPDR documentation built on June 24, 2024, 5:16 p.m.