pastecs: Package for Analysis of Space-Time Ecological Series
Version 1.3-18

Regulation, decomposition and analysis of space-time series. The pastecs library is a PNEC-Art4 and IFREMER (Benoit Beliaeff ) initiative to bring PASSTEC 2000 (http://www.obs-vlfr.fr/~enseigne/anado/passtec/passtec.htm) functionalities to R.

Browse man pages Browse package API and functions Browse package files

AuthorPhilippe Grosjean [aut, cre], Frederic Ibanez [aut], Michele Etienne [ctb]
Date of publication2014-03-02 14:01:51
MaintainerPhilippe Grosjean <phgrosjean@sciviews.org>
LicenseGPL (>= 2)
Version1.3-18
URL http://www.sciviews.org/pastecs
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("pastecs")

Man pages

abund: Sort variables by abundance
AutoD2: AutoD2, CrossD2 or CenterD2 analysis of a multiple...
bnr: A data frame of 163 benthic species measured across a...
buysbal: Buys-Ballot table
daystoyears: Convert time units from "days" to "years" or back
decaverage: Time series decomposition using a moving average
deccensus: Time decomposition using the CENSUS II method
decdiff: Time series decomposition using differences (trend...
decevf: Time series decomposition using eigenvector filtering (EVF)
decloess: Time series decomposition by the LOESS method
decmedian: Time series decomposition using a running median
decreg: Time series decomposition using a regression model
disjoin: Complete disjoined coded data (binary coding)
disto: Compute and plot a distogram
escouf: Choose variables using the Escoufier's equivalent vectors...
extract: Extract a subset of the original dataset
first: Get the first element of a vector
GetUnitText: Format a nice time units for labels in graphs
gleissberg.table: Table of probabilities according to the Gleissberg...
is.tseries: Is this object a time series?
last: Get the last element of a vector
local.trend: Calculate local trends using cumsum
marbio: Several zooplankton taxa measured across a transect
marphy: Physico-chemical records at the same stations as for marbio
match.tol: Determine matching observation with a tolerance in time-scale
pennington: Calculate Pennington statistics
pgleissberg: Gleissberg distribution probability
regarea: Regulate a series using the area method
regconst: Regulate a series using the constant value method
reglin: Regulation of a series using a linear interpolation
regspline: Regulation of a time series using splines
regul: Regulation of one or several time series using various...
regul.adj: Adjust regulation parameters
regul.screen: Test various regulation parameters
releve: A data frame of six phytoplankton taxa followed in time at...
specs: Collect parameters ("specifications") from one object to use...
stat.desc: Descriptive statistics on a data frame or time series
stat.pen: Pennington statistics on a data frame or time series
stat.slide: Sliding statistics
trend.test: Test if an increasing or decreasing trend exists in a time...
tsd: Decomposition of one or several regular time series using...
tseries: Convert a 'regul' or a 'tsd' object into a time series
turnogram: Calculate and plot a turnogram for a regular time series
turnpoints: Analyze turning points (peaks or pits)
vario: Compute and plot a semi-variogram

Functions

.gleissberg.table Man page
AutoD2 Man page
CenterD2 Man page
CrossD2 Man page
GetUnitText Man page
abund Man page
bnr Man page
buysbal Man page
daystoyears Man page
decaverage Man page
deccensus Man page
decdiff Man page
decevf Man page
decloess Man page
decmedian Man page
decreg Man page
disjoin Man page
disto Man page
escouf Man page
extract Man page
extract.abund Man page
extract.escouf Man page
extract.regul Man page
extract.tsd Man page
extract.turnogram Man page
extract.turnpoints Man page
first Man page
gleissberg.calc Source code
hist.regul Man page
identify.abund Man page
identify.escouf Man page
identify.local.trend Man page
identify.regul Man page
identify.turnogram Man page
is.tseries Man page
last Man page
lines.abund Man page
lines.escouf Man page
lines.regul Man page
lines.stat.slide Man page
lines.turnpoints Man page
local.trend Man page
marbio Man page
marphy Man page
match.tol Man page
pennington Man page
pgleissberg Man page Source code
plot.abund Man page
plot.escouf Man page
plot.regul Man page
plot.stat.slide Man page
plot.tsd Man page
plot.turnogram Man page
plot.turnpoints Man page
print.abund Man page
print.escouf Man page
print.regul Man page
print.specs.regul Man page
print.specs.tsd Man page
print.stat.slide Man page
print.summary.abund Man page
print.summary.escouf Man page
print.summary.regul Man page
print.summary.tsd Man page
print.summary.turnogram Man page
print.summary.turnpoints Man page
print.tsd Man page
print.turnogram Man page
print.turnpoints Man page
regarea Man page
regconst Man page
reglin Man page
regspline Man page
regul Man page
regul.adj Man page
regul.screen Man page
releve Man page
specs Man page
specs.regul Man page
specs.tsd Man page
stat.desc Man page
stat.pen Man page
stat.slide Man page
summary.abund Man page
summary.escouf Man page
summary.regul Man page
summary.tsd Man page
summary.turnogram Man page
summary.turnpoints Man page
trend.test Man page
tsd Man page
tseries Man page
turnogram Man page
turnpoints Man page
vario Man page
yearstodays Man page

Files

inst
inst/pastecs-Ex.R
inst/doc
inst/doc/pastecs.pdf
NAMESPACE
data
data/releve.rda
data/gleissberg.table.rda
data/marphy.rda
data/marbio.rda
data/bnr.rda
R
R/first.R
R/pgleissberg.R
R/print.summary.turnpoints.R
R/print.stat.slide.R
R/identify.local.trend.R
R/extract.turnpoints.R
R/CenterD2.R
R/summary.turnpoints.R
R/turnpoints.R
R/match.tol.R
R/lines.escouf.R
R/CrossD2.R
R/print.summary.escouf.R
R/reglin.R
R/identify.escouf.R
R/print.summary.regul.R
R/extract.tsd.R
R/summary.turnogram.R
R/extract.abund.R
R/last.R
R/trend.test.R
R/print.turnpoints.R
R/lines.regul.R
R/lines.turnpoints.R
R/plot.regul.R
R/stat.slide.R
R/regul.adj.R
R/regul.R
R/tsd.R
R/specs.tsd.R
R/specs.regul.R
R/plot.turnogram.R
R/plot.turnpoints.R
R/plot.escouf.R
R/abund.R
R/print.tsd.R
R/print.summary.abund.R
R/decmedian.R
R/print.turnogram.R
R/summary.escouf.R
R/hist.regul.R
R/disjoin.R
R/vario.R
R/print.specs.regul.R
R/print.summary.tsd.R
R/regconst.R
R/deccensus.R
R/turnogram.R
R/regarea.R
R/plot.stat.slide.R
R/extract.turnogram.R
R/print.specs.tsd.R
R/lines.stat.slide.R
R/specs.R
R/is.tseries.R
R/decaverage.R
R/print.abund.R
R/local.trend.R
R/summary.regul.R
R/regul.screen.R
R/yearstodays.R
R/daystoyears.R
R/decreg.R
R/identify.abund.R
R/escouf.R
R/buysbal.R
R/AutoD2.R
R/decdiff.R
R/plot.tsd.R
R/plot.abund.R
R/identify.turnogram.R
R/GetUnitText.R
R/extract.R
R/extract.escouf.R
R/regspline.R
R/print.regul.R
R/stat.pen.R
R/tseries.R
R/summary.abund.R
R/lines.abund.R
R/decloess.R
R/summary.tsd.R
R/print.summary.turnogram.R
R/disto.R
R/stat.desc.R
R/decevf.R
R/print.escouf.R
R/pennington.R
R/identify.regul.R
R/extract.regul.R
MD5
DESCRIPTION
man
man/stat.slide.Rd
man/regul.adj.Rd
man/tsd.Rd
man/last.Rd
man/vario.Rd
man/disto.Rd
man/turnogram.Rd
man/disjoin.Rd
man/decmedian.Rd
man/decaverage.Rd
man/pennington.Rd
man/marbio.Rd
man/specs.Rd
man/turnpoints.Rd
man/regul.screen.Rd
man/first.Rd
man/decloess.Rd
man/AutoD2.Rd
man/bnr.Rd
man/deccensus.Rd
man/regspline.Rd
man/match.tol.Rd
man/abund.Rd
man/reglin.Rd
man/regul.Rd
man/decdiff.Rd
man/decreg.Rd
man/regconst.Rd
man/releve.Rd
man/stat.desc.Rd
man/trend.test.Rd
man/gleissberg.table.Rd
man/buysbal.Rd
man/stat.pen.Rd
man/marphy.Rd
man/is.tseries.Rd
man/pgleissberg.Rd
man/regarea.Rd
man/local.trend.Rd
man/decevf.Rd
man/tseries.Rd
man/escouf.Rd
man/extract.Rd
man/GetUnitText.Rd
man/daystoyears.Rd
pastecs documentation built on May 29, 2017, 9:49 p.m.