pastecs: Package for Analysis of Space-Time Ecological Series

Regulation, decomposition and analysis of space-time series. The pastecs library is a PNEC-Art4 and IFREMER (Benoit Beliaeff <Benoit.Beliaeff@ifremer.fr>) initiative to bring PASSTEC 2000 (http://www.obs-vlfr.fr/~enseigne/anado/passtec/passtec.htm) functionalities to R.

AuthorPhilippe Grosjean [aut, cre], Frederic Ibanez [aut], Michele Etienne [ctb]
Date of publication2014-03-02 14:01:51
MaintainerPhilippe Grosjean <phgrosjean@sciviews.org>
LicenseGPL (>= 2)
Version1.3-18
http://www.sciviews.org/pastecs

View on CRAN

Man pages

abund: Sort variables by abundance

AutoD2: AutoD2, CrossD2 or CenterD2 analysis of a multiple...

bnr: A data frame of 163 benthic species measured across a...

buysbal: Buys-Ballot table

daystoyears: Convert time units from "days" to "years" or back

decaverage: Time series decomposition using a moving average

deccensus: Time decomposition using the CENSUS II method

decdiff: Time series decomposition using differences (trend...

decevf: Time series decomposition using eigenvector filtering (EVF)

decloess: Time series decomposition by the LOESS method

decmedian: Time series decomposition using a running median

decreg: Time series decomposition using a regression model

disjoin: Complete disjoined coded data (binary coding)

disto: Compute and plot a distogram

escouf: Choose variables using the Escoufier's equivalent vectors...

extract: Extract a subset of the original dataset

first: Get the first element of a vector

GetUnitText: Format a nice time units for labels in graphs

gleissberg.table: Table of probabilities according to the Gleissberg...

is.tseries: Is this object a time series?

last: Get the last element of a vector

local.trend: Calculate local trends using cumsum

marbio: Several zooplankton taxa measured across a transect

marphy: Physico-chemical records at the same stations as for marbio

match.tol: Determine matching observation with a tolerance in time-scale

pennington: Calculate Pennington statistics

pgleissberg: Gleissberg distribution probability

regarea: Regulate a series using the area method

regconst: Regulate a series using the constant value method

reglin: Regulation of a series using a linear interpolation

regspline: Regulation of a time series using splines

regul: Regulation of one or several time series using various...

regul.adj: Adjust regulation parameters

regul.screen: Test various regulation parameters

releve: A data frame of six phytoplankton taxa followed in time at...

specs: Collect parameters ("specifications") from one object to use...

stat.desc: Descriptive statistics on a data frame or time series

stat.pen: Pennington statistics on a data frame or time series

stat.slide: Sliding statistics

trend.test: Test if an increasing or decreasing trend exists in a time...

tsd: Decomposition of one or several regular time series using...

tseries: Convert a 'regul' or a 'tsd' object into a time series

turnogram: Calculate and plot a turnogram for a regular time series

turnpoints: Analyze turning points (peaks or pits)

vario: Compute and plot a semi-variogram

Functions

abund Man page
AutoD2 Man page
bnr Man page
buysbal Man page
CenterD2 Man page
CrossD2 Man page
daystoyears Man page
decaverage Man page
deccensus Man page
decdiff Man page
decevf Man page
decloess Man page
decmedian Man page
decreg Man page
disjoin Man page
disto Man page
escouf Man page
extract Man page
extract.abund Man page
extract.escouf Man page
extract.regul Man page
extract.tsd Man page
extract.turnogram Man page
extract.turnpoints Man page
first Man page
GetUnitText Man page
.gleissberg.table Man page
hist.regul Man page
identify.abund Man page
identify.escouf Man page
identify.local.trend Man page
identify.regul Man page
identify.turnogram Man page
is.tseries Man page
last Man page
lines.abund Man page
lines.escouf Man page
lines.regul Man page
lines.stat.slide Man page
lines.turnpoints Man page
local.trend Man page
marbio Man page
marphy Man page
match.tol Man page
pennington Man page
pgleissberg Man page
plot.abund Man page
plot.escouf Man page
plot.regul Man page
plot.stat.slide Man page
plot.tsd Man page
plot.turnogram Man page
plot.turnpoints Man page
print.abund Man page
print.escouf Man page
print.regul Man page
print.specs.regul Man page
print.specs.tsd Man page
print.stat.slide Man page
print.summary.abund Man page
print.summary.escouf Man page
print.summary.regul Man page
print.summary.tsd Man page
print.summary.turnogram Man page
print.summary.turnpoints Man page
print.tsd Man page
print.turnogram Man page
print.turnpoints Man page
regarea Man page
regconst Man page
reglin Man page
regspline Man page
regul Man page
regul.adj Man page
regul.screen Man page
releve Man page
specs Man page
specs.regul Man page
specs.tsd Man page
stat.desc Man page
stat.pen Man page
stat.slide Man page
summary.abund Man page
summary.escouf Man page
summary.regul Man page
summary.tsd Man page
summary.turnogram Man page
summary.turnpoints Man page
trend.test Man page
tsd Man page
tseries Man page
turnogram Man page
turnpoints Man page
vario Man page
yearstodays Man page

Files

pastecs
pastecs/inst
pastecs/inst/pastecs-Ex.R
pastecs/inst/doc
pastecs/inst/doc/pastecs.pdf
pastecs/NAMESPACE
pastecs/data
pastecs/data/releve.rda
pastecs/data/gleissberg.table.rda
pastecs/data/marphy.rda
pastecs/data/marbio.rda
pastecs/data/bnr.rda
pastecs/R
pastecs/R/first.R pastecs/R/pgleissberg.R pastecs/R/print.summary.turnpoints.R pastecs/R/print.stat.slide.R pastecs/R/identify.local.trend.R pastecs/R/extract.turnpoints.R pastecs/R/CenterD2.R pastecs/R/summary.turnpoints.R pastecs/R/turnpoints.R pastecs/R/match.tol.R pastecs/R/lines.escouf.R pastecs/R/CrossD2.R pastecs/R/print.summary.escouf.R pastecs/R/reglin.R pastecs/R/identify.escouf.R pastecs/R/print.summary.regul.R pastecs/R/extract.tsd.R pastecs/R/summary.turnogram.R pastecs/R/extract.abund.R pastecs/R/last.R pastecs/R/trend.test.R pastecs/R/print.turnpoints.R pastecs/R/lines.regul.R pastecs/R/lines.turnpoints.R pastecs/R/plot.regul.R pastecs/R/stat.slide.R pastecs/R/regul.adj.R pastecs/R/regul.R pastecs/R/tsd.R pastecs/R/specs.tsd.R pastecs/R/specs.regul.R pastecs/R/plot.turnogram.R pastecs/R/plot.turnpoints.R pastecs/R/plot.escouf.R pastecs/R/abund.R pastecs/R/print.tsd.R pastecs/R/print.summary.abund.R pastecs/R/decmedian.R pastecs/R/print.turnogram.R pastecs/R/summary.escouf.R pastecs/R/hist.regul.R pastecs/R/disjoin.R pastecs/R/vario.R pastecs/R/print.specs.regul.R pastecs/R/print.summary.tsd.R pastecs/R/regconst.R pastecs/R/deccensus.R pastecs/R/turnogram.R pastecs/R/regarea.R pastecs/R/plot.stat.slide.R pastecs/R/extract.turnogram.R pastecs/R/print.specs.tsd.R pastecs/R/lines.stat.slide.R pastecs/R/specs.R pastecs/R/is.tseries.R pastecs/R/decaverage.R pastecs/R/print.abund.R pastecs/R/local.trend.R pastecs/R/summary.regul.R pastecs/R/regul.screen.R pastecs/R/yearstodays.R pastecs/R/daystoyears.R pastecs/R/decreg.R pastecs/R/identify.abund.R pastecs/R/escouf.R pastecs/R/buysbal.R pastecs/R/AutoD2.R pastecs/R/decdiff.R pastecs/R/plot.tsd.R pastecs/R/plot.abund.R pastecs/R/identify.turnogram.R pastecs/R/GetUnitText.R pastecs/R/extract.R pastecs/R/extract.escouf.R
pastecs/R/regspline.R
pastecs/R/print.regul.R pastecs/R/stat.pen.R pastecs/R/tseries.R pastecs/R/summary.abund.R pastecs/R/lines.abund.R pastecs/R/decloess.R pastecs/R/summary.tsd.R pastecs/R/print.summary.turnogram.R pastecs/R/disto.R pastecs/R/stat.desc.R pastecs/R/decevf.R pastecs/R/print.escouf.R pastecs/R/pennington.R pastecs/R/identify.regul.R pastecs/R/extract.regul.R
pastecs/MD5
pastecs/DESCRIPTION
pastecs/man
pastecs/man/stat.slide.Rd pastecs/man/regul.adj.Rd pastecs/man/tsd.Rd pastecs/man/last.Rd pastecs/man/vario.Rd pastecs/man/disto.Rd pastecs/man/turnogram.Rd pastecs/man/disjoin.Rd pastecs/man/decmedian.Rd pastecs/man/decaverage.Rd pastecs/man/pennington.Rd pastecs/man/marbio.Rd pastecs/man/specs.Rd pastecs/man/turnpoints.Rd pastecs/man/regul.screen.Rd pastecs/man/first.Rd pastecs/man/decloess.Rd pastecs/man/AutoD2.Rd pastecs/man/bnr.Rd pastecs/man/deccensus.Rd pastecs/man/regspline.Rd pastecs/man/match.tol.Rd pastecs/man/abund.Rd pastecs/man/reglin.Rd pastecs/man/regul.Rd pastecs/man/decdiff.Rd pastecs/man/decreg.Rd pastecs/man/regconst.Rd pastecs/man/releve.Rd pastecs/man/stat.desc.Rd pastecs/man/trend.test.Rd pastecs/man/gleissberg.table.Rd pastecs/man/buysbal.Rd pastecs/man/stat.pen.Rd pastecs/man/marphy.Rd pastecs/man/is.tseries.Rd pastecs/man/pgleissberg.Rd pastecs/man/regarea.Rd pastecs/man/local.trend.Rd pastecs/man/decevf.Rd pastecs/man/tseries.Rd pastecs/man/escouf.Rd pastecs/man/extract.Rd pastecs/man/GetUnitText.Rd pastecs/man/daystoyears.Rd

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