pastecs: Package for Analysis of Space-Time Ecological Series

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Regulation, decomposition and analysis of space-time series. The pastecs library is a PNEC-Art4 and IFREMER (Benoit Beliaeff <Benoit.Beliaeff@ifremer.fr>) initiative to bring PASSTEC 2000 (http://www.obs-vlfr.fr/~enseigne/anado/passtec/passtec.htm) functionalities to R.

Author
Philippe Grosjean [aut, cre], Frederic Ibanez [aut], Michele Etienne [ctb]
Date of publication
2014-03-02 14:01:51
Maintainer
Philippe Grosjean <phgrosjean@sciviews.org>
License
GPL (>= 2)
Version
1.3-18
URLs

View on CRAN

Man pages

abund
Sort variables by abundance
AutoD2
AutoD2, CrossD2 or CenterD2 analysis of a multiple...
bnr
A data frame of 163 benthic species measured across a...
buysbal
Buys-Ballot table
daystoyears
Convert time units from "days" to "years" or back
decaverage
Time series decomposition using a moving average
deccensus
Time decomposition using the CENSUS II method
decdiff
Time series decomposition using differences (trend...
decevf
Time series decomposition using eigenvector filtering (EVF)
decloess
Time series decomposition by the LOESS method
decmedian
Time series decomposition using a running median
decreg
Time series decomposition using a regression model
disjoin
Complete disjoined coded data (binary coding)
disto
Compute and plot a distogram
escouf
Choose variables using the Escoufier's equivalent vectors...
extract
Extract a subset of the original dataset
first
Get the first element of a vector
GetUnitText
Format a nice time units for labels in graphs
gleissberg.table
Table of probabilities according to the Gleissberg...
is.tseries
Is this object a time series?
last
Get the last element of a vector
local.trend
Calculate local trends using cumsum
marbio
Several zooplankton taxa measured across a transect
marphy
Physico-chemical records at the same stations as for marbio
match.tol
Determine matching observation with a tolerance in time-scale
pennington
Calculate Pennington statistics
pgleissberg
Gleissberg distribution probability
regarea
Regulate a series using the area method
regconst
Regulate a series using the constant value method
reglin
Regulation of a series using a linear interpolation
regspline
Regulation of a time series using splines
regul
Regulation of one or several time series using various...
regul.adj
Adjust regulation parameters
regul.screen
Test various regulation parameters
releve
A data frame of six phytoplankton taxa followed in time at...
specs
Collect parameters ("specifications") from one object to use...
stat.desc
Descriptive statistics on a data frame or time series
stat.pen
Pennington statistics on a data frame or time series
stat.slide
Sliding statistics
trend.test
Test if an increasing or decreasing trend exists in a time...
tsd
Decomposition of one or several regular time series using...
tseries
Convert a 'regul' or a 'tsd' object into a time series
turnogram
Calculate and plot a turnogram for a regular time series
turnpoints
Analyze turning points (peaks or pits)
vario
Compute and plot a semi-variogram

Files in this package

pastecs
pastecs/inst
pastecs/inst/pastecs-Ex.R
pastecs/inst/doc
pastecs/inst/doc/pastecs.pdf
pastecs/NAMESPACE
pastecs/data
pastecs/data/releve.rda
pastecs/data/gleissberg.table.rda
pastecs/data/marphy.rda
pastecs/data/marbio.rda
pastecs/data/bnr.rda
pastecs/R
pastecs/R/first.R
pastecs/R/pgleissberg.R
pastecs/R/print.summary.turnpoints.R
pastecs/R/print.stat.slide.R
pastecs/R/identify.local.trend.R
pastecs/R/extract.turnpoints.R
pastecs/R/CenterD2.R
pastecs/R/summary.turnpoints.R
pastecs/R/turnpoints.R
pastecs/R/match.tol.R
pastecs/R/lines.escouf.R
pastecs/R/CrossD2.R
pastecs/R/print.summary.escouf.R
pastecs/R/reglin.R
pastecs/R/identify.escouf.R
pastecs/R/print.summary.regul.R
pastecs/R/extract.tsd.R
pastecs/R/summary.turnogram.R
pastecs/R/extract.abund.R
pastecs/R/last.R
pastecs/R/trend.test.R
pastecs/R/print.turnpoints.R
pastecs/R/lines.regul.R
pastecs/R/lines.turnpoints.R
pastecs/R/plot.regul.R
pastecs/R/stat.slide.R
pastecs/R/regul.adj.R
pastecs/R/regul.R
pastecs/R/tsd.R
pastecs/R/specs.tsd.R
pastecs/R/specs.regul.R
pastecs/R/plot.turnogram.R
pastecs/R/plot.turnpoints.R
pastecs/R/plot.escouf.R
pastecs/R/abund.R
pastecs/R/print.tsd.R
pastecs/R/print.summary.abund.R
pastecs/R/decmedian.R
pastecs/R/print.turnogram.R
pastecs/R/summary.escouf.R
pastecs/R/hist.regul.R
pastecs/R/disjoin.R
pastecs/R/vario.R
pastecs/R/print.specs.regul.R
pastecs/R/print.summary.tsd.R
pastecs/R/regconst.R
pastecs/R/deccensus.R
pastecs/R/turnogram.R
pastecs/R/regarea.R
pastecs/R/plot.stat.slide.R
pastecs/R/extract.turnogram.R
pastecs/R/print.specs.tsd.R
pastecs/R/lines.stat.slide.R
pastecs/R/specs.R
pastecs/R/is.tseries.R
pastecs/R/decaverage.R
pastecs/R/print.abund.R
pastecs/R/local.trend.R
pastecs/R/summary.regul.R
pastecs/R/regul.screen.R
pastecs/R/yearstodays.R
pastecs/R/daystoyears.R
pastecs/R/decreg.R
pastecs/R/identify.abund.R
pastecs/R/escouf.R
pastecs/R/buysbal.R
pastecs/R/AutoD2.R
pastecs/R/decdiff.R
pastecs/R/plot.tsd.R
pastecs/R/plot.abund.R
pastecs/R/identify.turnogram.R
pastecs/R/GetUnitText.R
pastecs/R/extract.R
pastecs/R/extract.escouf.R
pastecs/R/regspline.R
pastecs/R/print.regul.R
pastecs/R/stat.pen.R
pastecs/R/tseries.R
pastecs/R/summary.abund.R
pastecs/R/lines.abund.R
pastecs/R/decloess.R
pastecs/R/summary.tsd.R
pastecs/R/print.summary.turnogram.R
pastecs/R/disto.R
pastecs/R/stat.desc.R
pastecs/R/decevf.R
pastecs/R/print.escouf.R
pastecs/R/pennington.R
pastecs/R/identify.regul.R
pastecs/R/extract.regul.R
pastecs/MD5
pastecs/DESCRIPTION
pastecs/man
pastecs/man/stat.slide.Rd
pastecs/man/regul.adj.Rd
pastecs/man/tsd.Rd
pastecs/man/last.Rd
pastecs/man/vario.Rd
pastecs/man/disto.Rd
pastecs/man/turnogram.Rd
pastecs/man/disjoin.Rd
pastecs/man/decmedian.Rd
pastecs/man/decaverage.Rd
pastecs/man/pennington.Rd
pastecs/man/marbio.Rd
pastecs/man/specs.Rd
pastecs/man/turnpoints.Rd
pastecs/man/regul.screen.Rd
pastecs/man/first.Rd
pastecs/man/decloess.Rd
pastecs/man/AutoD2.Rd
pastecs/man/bnr.Rd
pastecs/man/deccensus.Rd
pastecs/man/regspline.Rd
pastecs/man/match.tol.Rd
pastecs/man/abund.Rd
pastecs/man/reglin.Rd
pastecs/man/regul.Rd
pastecs/man/decdiff.Rd
pastecs/man/decreg.Rd
pastecs/man/regconst.Rd
pastecs/man/releve.Rd
pastecs/man/stat.desc.Rd
pastecs/man/trend.test.Rd
pastecs/man/gleissberg.table.Rd
pastecs/man/buysbal.Rd
pastecs/man/stat.pen.Rd
pastecs/man/marphy.Rd
pastecs/man/is.tseries.Rd
pastecs/man/pgleissberg.Rd
pastecs/man/regarea.Rd
pastecs/man/local.trend.Rd
pastecs/man/decevf.Rd
pastecs/man/tseries.Rd
pastecs/man/escouf.Rd
pastecs/man/extract.Rd
pastecs/man/GetUnitText.Rd
pastecs/man/daystoyears.Rd