pathling_read_bundles: Create a data source from FHIR bundles

In pathling: A Library for using 'Pathling'

Create a data source from FHIR bundles

Description

Creates a data source from a directory containing FHIR bundles.

Usage

pathling_read_bundles(pc, path, resource_types, mime_type = MimeType$FHIR_JSON)

Arguments

pc	The PathlingContext object.
path	The URI of the directory containing the bundles.
resource_types	A sequence of resource type codes that should be extracted from the bundles.
mime_type	The MIME type of the bundles. Defaults to "application/fhir+json".

Value

A DataSource object that can be used to run queries against the data.

See Also

Pathling documentation - Reading Bundles

Other data source functions: pathling_read_bulk(), pathling_read_datasets(), pathling_read_delta(), pathling_read_ndjson(), pathling_read_parquet(), pathling_read_tables()

Examples

## Not run: 
data_source <- pc %>% pathling_read_bundles(pathling_examples('bundle-xml'),
     c("Patient", "Observation"), MimeType$FHIR_XML)
data_source %>% ds_read('Observation') %>% sparklyr::sdf_nrow()

## End(Not run)

pathling documentation built on Sept. 15, 2025, 5:08 p.m.