tx_to_coding: Convert codes to Coding structures

In pathling: A Library for using 'Pathling'

Convert codes to Coding structures

Description

Converts a Column containing codes into a Column that contains a Coding struct.

Usage

tx_to_coding(coding_column, system, version = NULL)

Arguments

coding_column	The Column containing the codes.
system	The URI of the system the codes belong to.
version	The version of the code system.

Details

The Coding struct Column can be used as an input to terminology functions such as tx_member_of and tx_translate. Please note that inside sparklyr verbs such as mutate the functions calls need to be preceded with !!, e.g: !!tx_to_coding(CODE, SNOMED_URI).

Value

A Column containing a Coding struct.

See Also

FHIR R4 - Coding

Other terminology helpers: tx_to_ecl_value_set(), tx_to_loinc_coding(), tx_to_snomed_coding()

Examples

## Not run: 
condition_df <- pathling_spark(pc) %>% sparklyr::copy_to(conditions)

# Convert codes to ICD-10 codings.
condition_df %>% sparklyr::mutate(
    icdCoding = !!tx_to_coding(CODE, "http://hl7.org/fhir/sid/icd-10"), .keep = 'none'
)

## End(Not run)

pathling documentation built on Sept. 15, 2025, 5:08 p.m.