Man pages for pathwayTMB
Pathway Based Tumor Mutational Burden
| final_character | final_character, the example's final signature |
| gene_path | gene_path, the pathways geneset |
| GenePathwayOncoplots | draw an GenePathwayOncoplots |
| genesmbol | genesmbol, the coding genes' length |
| get_final_signature | Filter cancer-specific dysfunction pathways. |
| get_mut_matrix | Converts MAF into mutation matrix. |
| get_PTMB | Calculate the Pathway-based Tumor Mutational Burden. |
| mut_matrix | mut_matrix, mutations matrix |
| plotKMcurves | Drawing Kaplan Meier Survival Curves Using the final... |
| plotMutInteract | Exact tests to detect mutually exclusive, co-occuring and... |
| plotROC | plot the ROC curve |
| PTMB_matrix | PTMB_matrix, the Pathway-based Tumor Mutational Burden matrix |
| sur | sur, the samples' survival data |
