pbkrtest: Parametric Bootstrap and Kenward Roger Based Methods for Mixed Model Comparison
Version 0.4-7

Test in mixed effects models. Attention is on mixed effects models as implemented in the 'lme4' package. This package implements a parametric bootstrap test and a Kenward Roger modification of F-tests for linear mixed effects models and a parametric bootstrap test for generalized linear mixed models.

AuthorUlrich Halekoh <uhalekoh@health.sdu.dk> Søren Højsgaard <sorenh@math.aau.dk>
Date of publication2017-03-15 08:49:25
MaintainerSøren Højsgaard <sorenh@math.aau.dk>
LicenseGPL (>= 2)
Version0.4-7
URL http://people.math.aau.dk/~sorenh/software/pbkrtest/
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("pbkrtest")

Getting started

README.md

Popular man pages

data-beets: beets data
get_ddf_Lb: Adjusted denomintor degress freedom for linear estimate for...
getkr: Extract (or "get") components from a 'KRmodcomp' object.
kr-vcov: Ajusted covariance matrix for linear mixed models according...
pbkrtest-internal: Internal functions in the pbkrtest package
pb-modcomp: Model comparison using parametric bootstrap methods.
pb-refdist: Calculate reference distribution using parametric bootstrap
See all...

All man pages Function index File listing

Man pages

data-beets: beets data
data-budworm: budworm data
get_ddf_Lb: Adjusted denomintor degress freedom for linear estimate for...
getkr: Extract (or "get") components from a 'KRmodcomp' object.
kr-modcomp: Ftest and degrees of freedom based on Kenward-Roger...
kr-vcov: Ajusted covariance matrix for linear mixed models according...
model-coerce: Conversion between a model object and a restriction matrix
pbkrtest-internal: Internal functions in the pbkrtest package
pb-modcomp: Model comparison using parametric bootstrap methods.
pb-refdist: Calculate reference distribution using parametric bootstrap

Functions

KR_adjust Source code
KRcommon Source code
KRmodcomp Man page Source code
KRmodcomp.lmerMod Man page Source code
KRmodcomp.mer Man page
KRmodcomp_init Man page Source code
KRmodcomp_init.lmerMod Man page
KRmodcomp_init.mer Man page
KRmodcomp_internal Man page Source code
LMM_Sigma_G Man page Source code
Lb_ddf Man page Source code
PBcommon Source code
PBmodcomp Man page Source code
PBmodcomp.lm Man page Source code
PBmodcomp.mer Man page
PBmodcomp.merMod Man page
PBrefdist Man page Source code
PBrefdist.lm Man page Source code
PBrefdist.mer Man page
PBrefdist.merMod Man page Source code
as.data.frame.XXmodcomp Man page Source code
beets Man page
budworm Man page
data-beets Man page
data-budworm Man page
ddf_Lb Man page Man page Source code
divZero Source code
finalizeKR Source code
finalizePB Source code
formula2list Source code
get.RT.dim.by.RT Source code
getKR Man page Source code
getLRT Man page Source code
getLRT.lm Man page Source code
getLRT.mer Man page
getLRT.merMod Man page
getME.all Source code
get_GI_matrices Source code
get_GI_parms Source code
get_Lb_ddf Man page Source code
get_Lb_ddf.lmerMod Man page Source code
get_SigmaG Man page Source code Source code
get_SigmaG.lmerMod Man page Source code
get_SigmaG.mer Man page Source code
get_Zt_group Source code
get_ddf_Lb Man page Man page Source code
get_ddf_Lb.lmerMod Man page Man page Source code
get_indices Source code
getkr Man page
j2r Source code
kr-modcomp Man page
kr-vcov Man page
lm_refDist Source code
makeSparse Source code
merMod_refDist Source code
model-coerce Man page
model2restrictionMatrix Man page Source code Source code
model2restrictionMatrix.lm Man page Source code
model2restrictionMatrix.mer Man page
model2restrictionMatrix.merMod Man page
ndexSymmat2vec Source code
ndexVec2Symmat Source code
orthComplement Source code
padPB Source code
pb-modcomp Man page
pb-refdist Man page
plot.PBmodcomp Man page Source code
plot.XXmodcomp Man page
print.KRmodcomp Man page Source code
print.PBmodcomp Man page Source code
print.summaryPB Man page Source code
restrictedModelMatrix Source code
restrictionMatrix2model Man page Source code
restrictionMatrix2model.lm Man page Source code
restrictionMatrix2model.mer Man page
restrictionMatrix2model.merMod Man page
restrictionMatrixBA Source code
s.lmm Source code
shgetME Source code
shget_Zt_group Source code
spur Source code
summarizePB Source code
summary.KRmodcomp Man page Source code
summary.PBmodcomp Man page Source code
vcovAdj Man page Source code
vcovAdj.lmerMod Man page
vcovAdj.mer Man page
vcovAdj0 Man page Source code
vcovAdj15 Man page Source code
vcovAdj15_internal Man page Source code
vcovAdj16 Man page Source code
vcovAdj16_internal Man page Source code Source code
vcovAdj2 Man page
vcovAdj_internal Man page Source code

Files

inst
inst/CITATION
inst/doc
inst/doc/pbkrtest-introduction.Rnw
inst/doc/pbkrtest-introduction.R
inst/doc/pbkrtest-introduction.pdf
NAMESPACE
data
data/beets.RData
data/budworm.RData
R
R/zzz-PB-anova-not-used.R
R/get_ddf_Lb.R
R/getKR.R
R/data-budworm.R
R/PB-modcomp.R
R/KR-utils.R
R/KR-across-versions.R
R/modelCoercion.R
R/KR-linearAlgebra.R
R/KR-vcovAdj0.R
R/KR-vcovAdj16.R
R/KR-Sigma-G.R
R/pbkrtest-package.R
R/KR-Sigma-G2.R
R/KR-modcomp.R
R/KR-vcovAdj.R
R/KR-init-modcomp.R
R/KR-vcovAdj15.R
R/PB-utils.R
R/PB-refdist.R
R/data-beets.R
vignettes
vignettes/pbkrtest-introduction.Rnw
README.md
MD5
build
build/vignette.rds
DESCRIPTION
ChangeLog
man
man/data-beets.Rd
man/data-budworm.Rd
man/kr-vcov.Rd
man/model-coerce.Rd
man/pb-refdist.Rd
man/getkr.Rd
man/pbkrtest-internal.Rd
man/kr-modcomp.Rd
man/pb-modcomp.Rd
man/get_ddf_Lb.Rd
pbkrtest documentation built on May 19, 2017, 11:18 a.m.

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