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pcmabc: Approximate Bayesian Computations for Phylogenetic Comparative Methods
Fits by ABC, the parameters of a stochastic process modelling the phylogeny and evolution of a suite of traits following the tree. The user may define an arbitrary Markov process for the trait and phylogeny. Importantly, trait-dependent speciation models are handled and fitted to data. See K. Bartoszek, P. Lio' (2019) <doi:10.5506/APhysPolBSupp.12.25>. The suggested geiger package can be obtained from CRAN's archive <https://cran.r-project.org/src/contrib/Archive/geiger/>, suggested to take latest version. Otherwise its required code is present in the pcmabc package. The suggested distory package can be obtained from CRAN's archive <https://cran.r-project.org/src/contrib/Archive/distory/>, suggested to take latest version.
Getting started
Browse package contents
Package details |
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| Author | Krzysztof Bartoszek <krzbar@protonmail.ch>, Pietro Lio' |
| Maintainer | Krzysztof Bartoszek <krzbar@protonmail.ch> |
| License | GPL (>= 2) | file LICENCE |
| Version | 1.1.3 |
| Package repository | View on CRAN |
| Installation |
Install the latest version of this package by entering the following in R:
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