getASelfing: Extends the pedigree according to number of selfing cycles...

In pedigreeTools: Versatile Functions for Working with Pedigrees

Extends the pedigree according to number of selfing cycles and also optionally computes the Additive Relationship Matrix for that pedigree.

Description

Extends the pedigree according to number of selfing cycles and also optionally computes the Additive Relationship Matrix for that pedigree.

Usage

getASelfing(
  ID,
  Par1,
  Par2,
  nCycles,
  nCyclesDefault,
  sepChar = "-F",
  verbose = FALSE,
  fileNewPed = NULL,
  computeA = TRUE
)

Arguments

ID	is a vector of individual IDs
Par1	vector of IDs of one of the parents
Par2	vector of IDs of the other parent
nCycles	vector that indicates number of selfing cycles for each individual.
nCyclesDefault	default value of nCycles
sepChar	character, used for expanded pedigree IDs
verbose	logical, print progress
fileNewPed	Output csv file (comma separated value) with columns 'label', 'sire', 'dam', with the full pull pedigree expanded taking into account the selfing cycles
computeA	Indicates if the A matrix is to be computed

Value

Returns A matrix computed for the extended pedigree if computeA=TRUE

pedigreeTools documentation built on Oct. 12, 2024, 9:07 a.m.