pensim: Simulation of high-dimensional data and parallelized repeated penalized regression
Version 1.2.9

Simulation of continuous, correlated high-dimensional data with time to event or binary response, and parallelized functions for Lasso, Ridge, and Elastic Net penalized regression with repeated starts and two-dimensional tuning of the Elastic Net.

Browse man pages Browse package API and functions Browse package files

AuthorL. Waldron, M. Pintilie, M.-S. Tsao, F. A. Shepherd, C. Huttenhower*, I. Jurisica* (*equal contribution)
Date of publication2014-03-14 11:32:43
MaintainerLevi Waldron <lwaldron.research@gmail.com>
LicenseGPL (>= 2)
Version1.2.9
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("pensim")

Man pages

beer.exprs: Lung adenocarcinoma microarray expression data of Beer et al....
beer.survival: Survival data for Beer et al. (2002) lung adenocarcinoma...
create.data: simulate correlated predictors with time-to-event or binary...
opt1D: Parallelized repeated tuning of Lasso or Ridge penalty...
opt2D: Parallelized, two-dimensional tuning of Elastic Net L1/L2...
opt.nested.crossval: Parallelized calculation of cross-validated risk score...
opt.splitval: Parallelized calculation of split training/test set...
pensim-package: Functions and data for simulation of high-dimensional data...
scan.l1l2: Function calculate cross-validated likelihood on a regular...

Functions

beer.exprs Man page
beer.survival Man page
create.data Man page Source code
opt.nested.crossval Man page Source code
opt.splitval Man page Source code
opt1D Man page Source code
opt2D Man page Source code
pensim Man page
pensim-package Man page
scan.l1l2 Man page Source code

Files

inst
inst/CITATION
inst/doc
inst/doc/pensim.R
inst/doc/pensim.pdf
inst/doc/pensim.Rnw
tests
tests/opt.nested.crossval.checks.R
NAMESPACE
data
data/beer.survival.rda
data/beer.exprs.rda
data/datalist
Changelog
R
R/opt2D.R
R/create.data.R
R/scan.l1l2.R
R/opt.nested.crossval.R
R/opt.splitval.R
R/opt1D.R
vignettes
vignettes/pensim.bib
vignettes/pensim.Rnw
MD5
build
build/vignette.rds
DESCRIPTION
man
man/opt1D.Rd
man/opt.nested.crossval.Rd
man/beer.exprs.Rd
man/beer.survival.Rd
man/scan.l1l2.Rd
man/pensim-package.Rd
man/create.data.Rd
man/opt.splitval.Rd
man/opt2D.Rd
pensim documentation built on May 19, 2017, 11:06 a.m.