permPATH: Permutation Based Gene Expression Pathway Analysis

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Can be used to carry out permutation based gene expression pathway analysis. This work was supported by a National Institute of Allergy and Infectious Disease/National Institutes of Health contract (No. HHSN272200900059C).

Author
Ivo D. Shterev [aut, cre], Kouros Owzar [aut], Gregory D. Sempowski [aut], Kenneth Wilder [ctb, cph] (wrote original version of ranker.h)
Date of publication
2016-09-20 01:21:39
Maintainer
Ivo D. Shterev <i.shterev@duke.edu>
License
GPL-3
Version
1.0

View on CRAN

Man pages

perm.path
Perform Permutation Based Pathway Analysis
permPATH2HTML
This is a function for creating an HTML file
permPath-package
Permutation Based Gene Expression Pathway Analysis.

Files in this package

permPATH
permPATH/inst
permPATH/inst/doc
permPATH/inst/doc/permPATHmanual.pdf
permPATH/inst/doc/permPATHmanual.R
permPATH/inst/doc/permPATHmanual.Rnw
permPATH/src
permPATH/src/permPATH.cpp
permPATH/src/ranker.h
permPATH/NAMESPACE
permPATH/NEWS
permPATH/R
permPATH/R/perm.path.R
permPATH/R/permPATH2HTML.R
permPATH/R/permPath-internal.R
permPATH/vignettes
permPATH/vignettes/permPATHbibl.bib
permPATH/vignettes/c2.cp.reactome.v4.0.symbols.gmt
permPATH/vignettes/permPATHmanual.Rnw
permPATH/MD5
permPATH/build
permPATH/build/vignette.rds
permPATH/DESCRIPTION
permPATH/man
permPATH/man/perm.path.Rd
permPATH/man/permPATH2HTML.Rd
permPATH/man/permPath-package.Rd