permPATH: Permutation Based Gene Expression Pathway Analysis
Version 1.0

Can be used to carry out permutation based gene expression pathway analysis. This work was supported by a National Institute of Allergy and Infectious Disease/National Institutes of Health contract (No. HHSN272200900059C).

AuthorIvo D. Shterev [aut, cre], Kouros Owzar [aut], Gregory D. Sempowski [aut], Kenneth Wilder [ctb, cph] (wrote original version of ranker.h)
Date of publication2016-09-20 01:21:39
MaintainerIvo D. Shterev <i.shterev@duke.edu>
LicenseGPL-3
Version1.0
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("permPATH")

Popular man pages

perm.path: Perform Permutation Based Pathway Analysis
permPATH2HTML: This is a function for creating an HTML file
permPath-package: Permutation Based Gene Expression Pathway Analysis.
See all...

All man pages Function index File listing

Man pages

perm.path: Perform Permutation Based Pathway Analysis
permPATH2HTML: This is a function for creating an HTML file
permPath-package: Permutation Based Gene Expression Pathway Analysis.

Functions

perm.path Man page Source code
permPATH2HTML Man page Source code
permPath Man page
permPath-package Man page

Files

inst
inst/doc
inst/doc/permPATHmanual.pdf
inst/doc/permPATHmanual.R
inst/doc/permPATHmanual.Rnw
src
src/permPATH.cpp
src/ranker.h
NAMESPACE
NEWS
R
R/perm.path.R
R/permPATH2HTML.R
R/permPath-internal.R
vignettes
vignettes/permPATHbibl.bib
vignettes/c2.cp.reactome.v4.0.symbols.gmt
vignettes/permPATHmanual.Rnw
MD5
build
build/vignette.rds
DESCRIPTION
man
man/perm.path.Rd
man/permPATH2HTML.Rd
man/permPath-package.Rd
permPATH documentation built on May 19, 2017, 4:13 p.m.

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