permPath-package: Permutation Based Gene Expression Pathway Analysis.

Description Details Author(s) References

Description

Can be used to carry out permutation based gene expression pathway analysis. This work was supported by a National Institute of Allergy and Infectious Disease/National Institutes of Health contract (No. HHSN272200900059C).

Details

Package: permPath
Type: Package
Version: 0.6
Date: 2016-05-13
License: GPL-3

Author(s)

I. D. Shterev, K. Owzar and G. D. Sempowski

Maintainer: I. D. Shterev <i.shterev@duke.edu>

References

B. Efron, R. Tibshirani (2007) On Testing the Significance of Sets of Genes. The Annals of Applied Statistics. Vol. 1, No 1, 107–129.

A. Subramanian, P. Tamayo, V. K. Mootha, S. Mukherjee, B. L. Ebert, M. A. Gillette, A. Paulovich, S. L. Pomeroy, T. R. Golub, E. S. Lander and J. P. Mesirov (2005), Gene Set Enrichment Analysis: A knowledge-based Approach for Interpreting Genome-Wide Expression Profiles. Proc. Natl. Acad. Sci. USA. Vol. 102, No 43, 15545–15550.


permPATH documentation built on Feb. 10, 2021, 5:11 p.m.