permPath-package: Permutation Based Gene Expression Pathway Analysis.
In permPATH: Permutation Based Gene Expression Pathway Analysis
permPath-package R Documentation
Permutation Based Gene Expression Pathway Analysis.
Description
Can be used to carry out permutation based gene expression pathway analysis. This work was supported by a National Institute of Allergy and Infectious Disease/National Institutes of Health contract (No. HHSN272200900059C).
Author(s)
I. D. Shterev, K. Owzar and G. D. Sempowski
Maintainer: I. D. Shterev <i.shterev@duke.edu>
References
B. Efron, R. Tibshirani (2007)
On Testing the Significance of Sets of Genes. The Annals
of Applied Statistics. Vol. 1, No 1, 107–129.
A. Subramanian, P. Tamayo, V. K. Mootha, S. Mukherjee,
B. L. Ebert, M. A. Gillette, A. Paulovich, S. L. Pomeroy,
T. R. Golub, E. S. Lander and J. P. Mesirov (2005),
Gene Set Enrichment Analysis: A knowledge-based Approach
for Interpreting Genome-Wide Expression Profiles.
Proc. Natl. Acad. Sci. USA. Vol. 102,
No 43, 15545–15550.
permPATH documentation built on Sept. 8, 2023, 5:31 p.m.
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| permPath-package | R Documentation |
Permutation Based Gene Expression Pathway Analysis.
Description
Can be used to carry out permutation based gene expression pathway analysis. This work was supported by a National Institute of Allergy and Infectious Disease/National Institutes of Health contract (No. HHSN272200900059C).
Author(s)
I. D. Shterev, K. Owzar and G. D. Sempowski
Maintainer: I. D. Shterev <i.shterev@duke.edu>
References
B. Efron, R. Tibshirani (2007) On Testing the Significance of Sets of Genes. The Annals of Applied Statistics. Vol. 1, No 1, 107–129.
A. Subramanian, P. Tamayo, V. K. Mootha, S. Mukherjee, B. L. Ebert, M. A. Gillette, A. Paulovich, S. L. Pomeroy, T. R. Golub, E. S. Lander and J. P. Mesirov (2005), Gene Set Enrichment Analysis: A knowledge-based Approach for Interpreting Genome-Wide Expression Profiles. Proc. Natl. Acad. Sci. USA. Vol. 102, No 43, 15545–15550.
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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