Man pages for pez
Phylogenetics for the Environmental Sciences
| cc.manip | Manipulating and examining comparative.comm objects |
| comparative.comm | Creates a community comparative ecology object, the basis of... |
| ConDivSim | Null models for functional-phylogenetic diversity |
| dist.xxx | Make co-existence matrices based on phylogeny (and/or)... |
| drop_tip | Trim a phylogeny |
| eco.scape | eco.space scape simulation with a macro-ecological focus |
| eco.xxx.regression | eco.xxx.regression |
| eco.xxx.regression.list | List of eco.xxx.regressions |
| fibre.plot | 'fibre.plot' (fibrously) plots a phylogeny |
| fingerprint.regression | Regress trait evolution against trait ecology (following... |
| generic.metrics | Calculate any metric(s) (and compare with null distributions) |
| laja | Macroinvertebrate samples from the Rio Laja of Mexico |
| pez | Phylogenetics for the Environmental Sciences |
| pez.dispersion | Calculate (phylogenetic) dispersion: examine assemblages in... |
| pez.dissimilarity | Calculate (phylogenetic) dissimilarity: compare assemblages... |
| pez.endemism | Calculate (phylogenetic) endemism |
| pez.evenness | Calculate (phylogenetic) evenness: examine assemblage... |
| pez-internal | Internal pez Functions |
| pez.metrics | Phylogenetic and functional trait metrics within pez |
| pez.shape | Calculate (phylogenetic) shape: examine assemblage... |
| pglmm | Phylogenetic Generalised Linear Mixed Model for Community... |
| phy.build | Build a novel phylogeny from existing data |
| phy.signal | Calculate phylogenetic 'signal' |
| plot.comparative.comm | Dot-plots of community presence/absence or abundance |
| scape | Simulate phylogenetic community structure across a landscape |
| sim.meta | Simulate a meta-community (and its phylogeny) |
| sim.phy | Simulate phylogenies |
| trait.asm | Produces simulated communities based on species attributes |
| traitgram.cc | Traitgram for comparative community object |
