API for pez
Phylogenetics for the Environmental Sciences

Global functions
.Random.seed	Man page
.aed	Man page Source code
.bed	Man page Source code
.check.ext.dist	Source code
.comdist	Man page Source code
.d	Man page Source code
.delta	Man page Source code
.dist.fd	Man page Source code
.eaed	Man page Source code
.eco.env.regression	Source code
.eco.evo.clade.regression	Man page
.eco.evo.regression	Man page
.eco.null	Man page Source code
.eco.phy.regression	Man page Source code
.eco.trait.regression	Source code
.eed	Man page Source code
.eigen.sum	Man page Source code
.find.unique.branch.length	Source code
.gamma	Man page Source code
.haed	Man page Source code
.hed	Man page Source code
.iac	Man page Source code
.innd	Man page Source code Source code
.kappa	Man page Source code
.lambda	Man page Source code
.make.polytomy	Source code
.metric.null	Man page Source code
.mipd	Man page Source code
.mntd	Man page Source code
.mpd	Man page Source code
.pae	Man page Source code
.pcd	Man page Source code
.pd	Man page Source code
.pe	Man page Source code
.phylo.entropy	Man page Source code
.phylosor	Man page Source code
.plot.regression	Man page Source code
.prepare.regression.output	Man page Source code
.pse	Man page Source code
.psr	Man page Source code
.psv	Man page Source code
.rao	Man page Source code
.removeErrors	Man page Source code
.scheiner	Man page Source code
.ses	Man page Source code
.ses.innd	Man page Source code
.ses.mipd	Man page Source code
.ses.mntd	Man page Source code
.ses.mpd	Man page Source code
.ses.vntd	Man page Source code
.ses.vpd	Man page Source code
.simpson.phylogenetic	Man page Source code
.sqrt.phy	Man page Source code
.summary.regression	Man page
.taxon	Man page Source code
.unifrac	Man page Source code
.vntd	Man page Source code
.vpd	Man page Source code
ConDivSim	Man page Source code
[.comparative.comm	Man page
`comm<-`	Source code
`env<-`	Source code
`sites<-`	Source code
`species<-`	Source code
`traits<-`	Source code
`tree<-`	Source code
as.data.frame.comparative.comm	Man page Source code
assemblage.phylogenies	Man page Source code
bind.replace	Man page Source code
cc.manip	Man page
comm	Man page Source code
comm.dist	Man page Source code
comm.dist.comparative.comm	Man page Source code
comm.dist.matrix	Man page Source code
comm<-	Man page
communityPGLMM	Man page Source code
communityPGLMM.binary	Man page Source code
communityPGLMM.binary.LRT	Man page Source code
communityPGLMM.gaussian	Man page Source code
communityPGLMM.matrix.structure	Man page Source code
communityPGLMM.predicted.values	Man page Source code
comparative.comm	Man page Source code
congeneric.impute	Man page Source code
congeneric.merge	Man page Source code
dist.func.default	Man page Source code
dist.xxx	Man page
drop_tip	Man page Source code
eco.env.regression	Man page Source code
eco.phy.regression	Man page Source code
eco.scape	Man page Source code
eco.trait.regression	Man page Source code
eco.xxx.regression	Man page
eco.xxx.regression.list	Man page
edge2phylo	Man page Source code
env	Man page Source code
env.names	Man page Source code
env<-	Man page
fibre.plot	Man page Source code
fingerprint.regression	Man page Source code
funct.phylo.dist	Man page Source code
funct.phylo.dist.comparative.comm	Source code
generic.metrics	Man page Source code
generic.null	Man page Source code
invert.traits	Man page
invert.tree	Man page
laja	Man page
package-pez	Man page
pez	Man page
pez-package	Man page
pez.dispersion	Man page Source code
pez.dissimilarity	Man page Source code
pez.endemism	Man page Source code
pez.evenness	Man page Source code
pez.metrics	Man page
pez.shape	Man page Source code
pglmm	Man page
phy	Man page
phy.build	Man page
phy.signal	Man page Source code
phy<-	Man page
phylo.dist	Man page Source code
phylo.dist.comparative.comm	Man page Source code
phylo.dist.phylo	Man page Source code
pianka.dist	Man page Source code
pianka.dist.comparative.comm	Man page Source code
pianka.dist.matrix	Man page Source code
plot.communityPGLMM	Man page Source code
plot.comparative.comm	Man page Source code
plot.eco.xxx.regression	Man page Source code
plot.eco.xxx.regression.list	Man page Source code
plot.fingerprint.regression	Man page Source code
princompOne	Man page Source code
print.communityPGLMM	Source code
print.comparative.comm	Man page Source code
print.eco.xxx.regression	Man page Source code
print.eco.xxx.regression.list	Man page Source code
print.fingerprint.regression	Man page Source code
river.env	Man page
river.sites	Man page
scape	Man page Source code
sim.bd.phy	Man page Source code
sim.bd.tr.phy	Man page Source code
sim.meta	Man page
sim.meta.comm	Man page Source code
sim.meta.phy.comm	Man page Source code
sim.phy	Man page
sites	Man page Source code
sites<-	Man page
species	Man page Source code
species<-	Man page
summary.communityPGLMM	Man page Source code
summary.eco.xxx.regression	Man page Source code
summary.eco.xxx.regression.list	Man page Source code
summary.fingerprint.regression	Man page Source code
summary.phy.structure	Man page
trait.asm	Man page Source code
trait.names	Man page Source code
traitgram.cc	Man page Source code
traits	Man page Source code
traits.dist	Man page Source code
traits.dist.comparative.comm	Man page Source code
traits.dist.data.frame	Man page Source code
traits.dist.default	Man page Source code
traits<-	Man page
tree	Man page Source code
tree<-	Man page
within.comparative.comm	Man page Source code