API for pez
Phylogenetics for the Environmental Sciences

Global functions
.Random.seed Man page
.aed Man page Source code
.bed Man page Source code
.check.ext.dist Source code
.comdist Man page Source code
.d Man page Source code
.delta Man page Source code
.dist.fd Man page Source code
.eaed Man page Source code
.eco.env.regression Source code
.eco.evo.clade.regression Man page
.eco.evo.regression Man page
.eco.null Man page Source code
.eco.phy.regression Man page Source code
.eco.trait.regression Source code
.eed Man page Source code
.eigen.sum Man page Source code
.find.unique.branch.length Source code
.gamma Man page Source code
.haed Man page Source code
.hed Man page Source code
.iac Man page Source code
.innd Man page Source code Source code
.kappa Man page Source code
.lambda Man page Source code
.make.polytomy Source code
.metric.null Man page Source code
.mipd Man page Source code
.mntd Man page Source code
.mpd Man page Source code
.pae Man page Source code
.pcd Man page Source code
.pd Man page Source code
.pe Man page Source code
.phylo.entropy Man page Source code
.phylosor Man page Source code
.plot.regression Man page Source code
.prepare.regression.output Man page Source code
.pse Man page Source code
.psr Man page Source code
.psv Man page Source code
.rao Man page Source code
.removeErrors Man page Source code
.scheiner Man page Source code
.ses Man page Source code
.ses.innd Man page Source code
.ses.mipd Man page Source code
.ses.mntd Man page Source code
.ses.mpd Man page Source code
.ses.vntd Man page Source code
.ses.vpd Man page Source code
.simpson.phylogenetic Man page Source code
.sqrt.phy Man page Source code
.summary.regression Man page
.taxon Man page Source code
.unifrac Man page Source code
.vntd Man page Source code
.vpd Man page Source code
ConDivSim Man page Source code
[.comparative.comm Man page
`comm<-` Source code
`env<-` Source code
`sites<-` Source code
`species<-` Source code
`traits<-` Source code
`tree<-` Source code
as.data.frame.comparative.comm Man page Source code
assemblage.phylogenies Man page Source code
bind.replace Man page Source code
cc.manip Man page
comm Man page Source code
comm.dist Man page Source code
comm.dist.comparative.comm Man page Source code
comm.dist.matrix Man page Source code
comm<- Man page
communityPGLMM Man page Source code
communityPGLMM.binary Man page Source code
communityPGLMM.binary.LRT Man page Source code
communityPGLMM.gaussian Man page Source code
communityPGLMM.matrix.structure Man page Source code
communityPGLMM.predicted.values Man page Source code
comparative.comm Man page Source code
congeneric.impute Man page Source code
congeneric.merge Man page Source code
dist.func.default Man page Source code
dist.xxx Man page
drop_tip Man page Source code
eco.env.regression Man page Source code
eco.phy.regression Man page Source code
eco.scape Man page Source code
eco.trait.regression Man page Source code
eco.xxx.regression Man page
eco.xxx.regression.list Man page
edge2phylo Man page Source code
env Man page Source code
env.names Man page Source code
env<- Man page
fibre.plot Man page Source code
fingerprint.regression Man page Source code
funct.phylo.dist Man page Source code
funct.phylo.dist.comparative.comm Source code
generic.metrics Man page Source code
generic.null Man page Source code
invert.traits Man page
invert.tree Man page
laja Man page
package-pez Man page
pez Man page
pez-package Man page
pez.dispersion Man page Source code
pez.dissimilarity Man page Source code
pez.endemism Man page Source code
pez.evenness Man page Source code
pez.metrics Man page
pez.shape Man page Source code
pglmm Man page
phy Man page
phy.build Man page
phy.signal Man page Source code
phy<- Man page
phylo.dist Man page Source code
phylo.dist.comparative.comm Man page Source code
phylo.dist.phylo Man page Source code
pianka.dist Man page Source code
pianka.dist.comparative.comm Man page Source code
pianka.dist.matrix Man page Source code
plot.communityPGLMM Man page Source code
plot.comparative.comm Man page Source code
plot.eco.xxx.regression Man page Source code
plot.eco.xxx.regression.list Man page Source code
plot.fingerprint.regression Man page Source code
princompOne Man page Source code
print.communityPGLMM Source code
print.comparative.comm Man page Source code
print.eco.xxx.regression Man page Source code
print.eco.xxx.regression.list Man page Source code
print.fingerprint.regression Man page Source code
river.env Man page
river.sites Man page
scape Man page Source code
sim.bd.phy Man page Source code
sim.bd.tr.phy Man page Source code
sim.meta Man page
sim.meta.comm Man page Source code
sim.meta.phy.comm Man page Source code
sim.phy Man page
sites Man page Source code
sites<- Man page
species Man page Source code
species<- Man page
summary.communityPGLMM Man page Source code
summary.eco.xxx.regression Man page Source code
summary.eco.xxx.regression.list Man page Source code
summary.fingerprint.regression Man page Source code
summary.phy.structure Man page
trait.asm Man page Source code
trait.names Man page Source code
traitgram.cc Man page Source code
traits Man page Source code
traits.dist Man page Source code
traits.dist.comparative.comm Man page Source code
traits.dist.data.frame Man page Source code
traits.dist.default Man page Source code
traits<- Man page
tree Man page Source code
tree<- Man page
within.comparative.comm Man page Source code
pez documentation built on June 17, 2021, 5:11 p.m.